MGE detailed information
MGE type: Genomic_island MGE length: 10513 bp
Accession: NZ_CP084529 Location: 1257262..1267774 Organism: Escherichia coli strain Origami2-DE3 Replicon: chromosome
Accession: NZ_CP084529 Location: 1257262..1267774 Organism: Escherichia coli strain Origami2-DE3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFW28_RS06060 (1253094) | 1253094..1254425 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LFW28_RS06065 (1254447) | 1254447..1255436 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LFW28_RS06070 (1255535) | 1255535..1256473 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LFW28_RS06075 (1256788) | 1256788..1257006 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LFW28_RS06080 (1257262) | 1257262..1257801 | + | 540 | WP_000675733.1 | protein YhaB | - |
| LFW28_RS06085 (1257823) | 1257823..1259010 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| LFW28_RS06095 (1260598) | 1260598..1261743 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LFW28_RS06100 (1261840) | 1261840..1262730 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LFW28_RS06105 (1262760) | 1262760..1263530 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LFW28_RS06110 (1263546) | 1263546..1264880 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LFW28_RS06115 (1265255) | 1265255..1266826 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| LFW28_RS06120 (1266975) | 1266975..1267310 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LFW28_RS06125 (1267310) | 1267310..1267774 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LFW28_RS06130 (1267829) | 1267829..1268638 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LFW28_RS06135 (1268887) | 1268887..1270167 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LFW28_RS06140 (1270190) | 1270190..1270663 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LFW28_RS06145 (1270674) | 1270674..1271045 | + | 372 | Protein_1208 | PTS sugar transporter subunit IIC | - |
| LFW28_RS06150 (1271041) | 1271041..1271598 | + | 558 | Protein_1209 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |