MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP083492 Location: 4264115..4275789 Organism: Escherichia coli strain elppa8 Replicon: chromosome
Accession: NZ_CP083492 Location: 4264115..4275789 Organism: Escherichia coli strain elppa8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U11_RS20560 (4259116) | 4259116..4259550 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| K9U11_RS20565 (4259568) | 4259568..4260446 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| K9U11_RS20570 (4260436) | 4260436..4261215 | - | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| K9U11_RS20575 (4261226) | 4261226..4261699 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| K9U11_RS20580 (4261722) | 4261722..4263002 | - | 1281 | WP_228595429.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| K9U11_RS20585 (4263251) | 4263251..4264060 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| K9U11_RS20590 (4264115) | 4264115..4264579 | - | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| K9U11_RS20595 (4264579) | 4264579..4264914 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| K9U11_RS20600 (4265063) | 4265063..4266634 | - | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| K9U11_RS20605 (4267009) | 4267009..4268343 | + | 1335 | WP_228595430.1 | galactarate/glucarate/glycerate transporter GarP | - |
| K9U11_RS20610 (4268359) | 4268359..4269129 | + | 771 | WP_228595431.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| K9U11_RS20615 (4269159) | 4269159..4270049 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| K9U11_RS20620 (4270146) | 4270146..4271291 | + | 1146 | WP_228595432.1 | glycerate 2-kinase | - |
| K9U11_RS20630 (4272314) | 4272314..4273501 | - | 1188 | WP_000484594.1 | YhaC family protein | - |
| K9U11_RS20635 (4273523) | 4273523..4274062 | - | 540 | WP_000675733.1 | protein YhaB | - |
| K9U11_RS20640 (4274318) | 4274318..4274536 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| K9U11_RS20645 (4274851) | 4274851..4275789 | + | 939 | WP_071208506.1 | transcriptional regulator TdcA | - |
| K9U11_RS20650 (4275888) | 4275888..4276877 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| K9U11_RS20655 (4276899) | 4276899..4278230 | + | 1332 | Protein_4021 | threonine/serine transporter TdcC | - |
| K9U11_RS20660 (4278256) | 4278256..4279464 | + | 1209 | WP_001295545.1 | propionate kinase | - |
| K9U11_RS20665 (4279498) | 4279498..4279641 | + | 144 | Protein_4023 | hypothetical protein | - |
| K9U11_RS20670 (4279698) | 4279698..4280395 | + | 698 | Protein_4024 | IS1 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |