MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP080139 Location: 3228003..3237950 Organism: Escherichia coli strain PK8241 Replicon: chromosome
Accession: NZ_CP080139 Location: 3228003..3237950 Organism: Escherichia coli strain PK8241 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY05_RS16445 (3223835) | 3223835..3225166 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| KZY05_RS16450 (3225188) | 3225188..3226177 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| KZY05_RS16455 (3226276) | 3226276..3227214 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| KZY05_RS16460 (3227529) | 3227529..3227747 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| KZY05_RS16465 (3228003) | 3228003..3228542 | + | 540 | WP_000675733.1 | protein YhaB | - |
| KZY05_RS16470 (3228564) | 3228564..3229751 | + | 1188 | WP_219788351.1 | YhaC family protein | - |
| KZY05_RS16480 (3230774) | 3230774..3231919 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| KZY05_RS16485 (3232016) | 3232016..3232906 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| KZY05_RS16490 (3232936) | 3232936..3233706 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| KZY05_RS16495 (3233722) | 3233722..3235056 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| KZY05_RS16500 (3235431) | 3235431..3237002 | + | 1572 | WP_032202412.1 | galactarate dehydratase | - |
| KZY05_RS16505 (3237151) | 3237151..3237486 | + | 336 | WP_025670440.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| KZY05_RS16510 (3237486) | 3237486..3237950 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| KZY05_RS16515 (3238005) | 3238005..3238814 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| KZY05_RS16520 (3239063) | 3239063..3240343 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| KZY05_RS16525 (3240366) | 3240366..3240839 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| KZY05_RS16530 (3240850) | 3240850..3241629 | + | 780 | WP_032216390.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| KZY05_RS16535 (3241619) | 3241619..3242497 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| KZY05_RS16540 (3242515) | 3242515..3242949 | + | 435 | WP_000948814.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |