MGE detailed information
MGE type: Genomic_island MGE length: 14686 bp
Accession: NZ_CP070232 Location: 606535..621220 Organism: Escherichia coli strain 10R Replicon: chromosome
Accession: NZ_CP070232 Location: 606535..621220 Organism: Escherichia coli strain 10R Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTF63_RS02865 () | 601944..602822 | - | 879 | WP_039268471.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| JTF63_RS02870 () | 602812..603591 | - | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| JTF63_RS02875 () | 603602..604075 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| JTF63_RS02880 () | 604098..605036 | - | 939 | Protein_563 | class II D-tagatose-bisphosphate aldolase, non-catalytic subunit | - |
| JTF63_RS02885 () | 605128..605460 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| JTF63_RS02890 () | 605507..606382 | - | 876 | WP_000239590.1 | class A extended-spectrum beta-lactamase CTX-M-15 | - |
| JTF63_RS02895 () | 606638..607900 | - | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
| JTF63_RS02900 () | 608086..608433 | - | 348 | Protein_567 | class II D-tagatose-bisphosphate aldolase, non-catalytic subunit | - |
| JTF63_RS02905 () | 608682..609491 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| JTF63_RS02910 () | 609546..610010 | - | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| JTF63_RS02915 () | 610010..610345 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| JTF63_RS02920 () | 610494..612065 | - | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| JTF63_RS02925 () | 612440..613774 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| JTF63_RS02930 () | 613790..614560 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| JTF63_RS02935 () | 614590..615480 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| JTF63_RS02940 () | 615577..616722 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| JTF63_RS02950 () | 617745..618932 | - | 1188 | WP_000484598.1 | YhaC family protein | - |
| JTF63_RS02955 () | 618954..619493 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| JTF63_RS02960 () | 619749..620093 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| JTF63_RS02965 () | 620282..621220 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| JTF63_RS02970 () | 621319..622308 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| JTF63_RS02975 () | 622330..623661 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| JTF63_RS02980 () | 623687..624895 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.01 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.006 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |