MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP054214 Location: 4146604..4156551 Organism: Escherichia coli strain EcPF40 Replicon: chromosome
Accession: NZ_CP054214 Location: 4146604..4156551 Organism: Escherichia coli strain EcPF40 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR076_RS20080 () | 4142436..4143767 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| HR076_RS20085 () | 4143789..4144778 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| HR076_RS20090 () | 4144877..4145815 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| HR076_RS20095 () | 4146004..4146348 | + | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| HR076_RS20100 () | 4146604..4147143 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| HR076_RS20105 () | 4147165..4148352 | + | 1188 | WP_001774050.1 | YhaC family protein | - |
| HR076_RS20115 () | 4149375..4150520 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| HR076_RS20120 () | 4150617..4151507 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| HR076_RS20125 () | 4151537..4152307 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| HR076_RS20130 () | 4152323..4153657 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| HR076_RS20135 () | 4154032..4155603 | + | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| HR076_RS20140 () | 4155752..4156087 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| HR076_RS20145 () | 4156087..4156551 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| HR076_RS20150 () | 4156606..4157415 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| HR076_RS20155 () | 4157664..4158944 | + | 1281 | WP_000681933.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| HR076_RS20160 () | 4158967..4159440 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| HR076_RS20165 () | 4159451..4160230 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| HR076_RS20170 () | 4160220..4161098 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HR076_RS20175 () | 4161116..4161550 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |