MGE detailed information
MGE type: Genomic_island MGE length: 9953 bp
Accession: NZ_CP053251 Location: 4964341..4974293 Organism: Escherichia coli strain SCU-204 Replicon: chromosome
Accession: NZ_CP053251 Location: 4964341..4974293 Organism: Escherichia coli strain SCU-204 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ42_RS23980 () | 4960173..4961504 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| HHJ42_RS23985 () | 4961526..4962515 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| HHJ42_RS23990 () | 4962614..4963552 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| HHJ42_RS23995 () | 4963741..4964085 | + | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| HHJ42_RS24000 () | 4964341..4964880 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| HHJ42_RS24005 () | 4964902..4966089 | + | 1188 | Protein_4687 | YhaC family protein | - |
| HHJ42_RS24015 () | 4967116..4968261 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| HHJ42_RS24020 () | 4968358..4969248 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| HHJ42_RS24025 () | 4969278..4970048 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| HHJ42_RS24030 () | 4970064..4971398 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| HHJ42_RS24035 () | 4971773..4973344 | + | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| HHJ42_RS24040 () | 4973494..4973829 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| HHJ42_RS24045 () | 4973829..4974293 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| HHJ42_RS24050 () | 4974348..4975157 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| HHJ42_RS24055 () | 4975406..4976686 | + | 1281 | WP_000681933.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| HHJ42_RS24060 () | 4976709..4977182 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| HHJ42_RS24065 () | 4977193..4977972 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| HHJ42_RS24070 () | 4977962..4978840 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HHJ42_RS24075 () | 4978858..4979292 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |