MGE detailed information
MGE type: Genomic_island MGE length: 11658 bp
Accession: NZ_CP045741 Location: 1656009..1667666 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Accession: NZ_CP045741 Location: 1656009..1667666 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHR40_RS07880 () | 1652185..1652742 | - | 558 | Protein_1519 | amidohydrolase family protein | - |
| GHR40_RS07885 () | 1652738..1653109 | - | 372 | Protein_1520 | PTS sugar transporter subunit IIC | - |
| GHR40_RS07890 () | 1653120..1653593 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| GHR40_RS07895 () | 1653616..1654896 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| GHR40_RS07900 () | 1655145..1655954 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| GHR40_RS07905 () | 1656009..1656473 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| GHR40_RS07910 () | 1656473..1656808 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| GHR40_RS07915 () | 1656957..1658528 | - | 1572 | WP_001273747.1 | galactarate dehydratase | - |
| GHR40_RS07920 () | 1658903..1660237 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| GHR40_RS07925 () | 1660253..1661023 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| GHR40_RS07930 () | 1661053..1661943 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| GHR40_RS07935 () | 1662040..1663185 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| GHR40_RS07945 () | 1665028..1665385 | - | 358 | Protein_1531 | hypothetical protein | - |
| GHR40_RS07950 () | 1665407..1665944 | - | 538 | Protein_1532 | hypothetical protein | - |
| GHR40_RS07955 () | 1666200..1666417 | - | 218 | Protein_1533 | DNA-binding transcriptional activator TdcR | - |
| GHR40_RS07960 () | 1666728..1667666 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| GHR40_RS07965 () | 1667765..1668754 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| GHR40_RS07970 () | 1668776..1670107 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| GHR40_RS07975 () | 1670133..1671341 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.002 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |