MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP043217 Location: 2394258..2404205 Organism: Escherichia coli O80:H26 strain EC-107 Replicon: chromosome
Accession: NZ_CP043217 Location: 2394258..2404205 Organism: Escherichia coli O80:H26 strain EC-107 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA02_RS12075 () | 2390090..2391421 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| FYA02_RS12080 () | 2391443..2392432 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| FYA02_RS12085 () | 2392531..2393469 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| FYA02_RS12090 () | 2393658..2394002 | + | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| FYA02_RS12095 () | 2394258..2394797 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| FYA02_RS12100 () | 2394819..2396006 | + | 1188 | WP_032216387.1 | YhaC family protein | - |
| FYA02_RS12110 () | 2397029..2398174 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| FYA02_RS12115 () | 2398271..2399161 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| FYA02_RS12120 () | 2399191..2399961 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| FYA02_RS12125 () | 2399977..2401311 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| FYA02_RS12130 () | 2401686..2403257 | + | 1572 | WP_032202412.1 | galactarate dehydratase | - |
| FYA02_RS12135 () | 2403406..2403741 | + | 336 | WP_025670440.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| FYA02_RS12140 () | 2403741..2404205 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| FYA02_RS12145 () | 2404260..2405069 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| FYA02_RS12150 () | 2405318..2406598 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| FYA02_RS12155 () | 2406621..2407094 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| FYA02_RS12160 () | 2407105..2407884 | + | 780 | WP_032216390.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| FYA02_RS12165 () | 2407874..2408752 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| FYA02_RS12170 () | 2408770..2409204 | + | 435 | WP_000948814.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |