MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP042352 Location: 3279458..3291027 Organism: Escherichia coli strain RM9513 Replicon: chromosome
Accession: NZ_CP042352 Location: 3279458..3291027 Organism: Escherichia coli strain RM9513 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS836_RS16140 (3275783) | 3275783..3276991 | - | 1209 | WP_064221458.1 | propionate kinase | - |
| FS836_RS16145 (3277017) | 3277017..3278348 | - | 1332 | WP_000107721.1 | threonine/serine transporter TdcC | - |
| FS836_RS16150 (3278370) | 3278370..3279359 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| FS836_RS16155 (3279458) | 3279458..3280396 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| FS836_RS16160 (3280711) | 3280711..3280929 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| FS836_RS16165 (3281185) | 3281185..3281724 | + | 540 | WP_000675733.1 | protein YhaB | - |
| FS836_RS16170 (3281746) | 3281746..3282934 | + | 1189 | Protein_3064 | YhaC family protein | - |
| FS836_RS16180 (3283851) | 3283851..3284996 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| FS836_RS16185 (3285093) | 3285093..3285983 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| FS836_RS16190 (3286013) | 3286013..3286783 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| FS836_RS16195 (3286799) | 3286799..3288133 | - | 1335 | WP_060615244.1 | galactarate/glucarate/glycerate transporter GarP | - |
| FS836_RS16200 (3288508) | 3288508..3290079 | + | 1572 | WP_064221457.1 | galactarate dehydratase | - |
| FS836_RS16205 (3290228) | 3290228..3290563 | + | 336 | WP_001308975.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| FS836_RS16210 (3290563) | 3290563..3291027 | + | 465 | WP_000347251.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| FS836_RS16215 (3291082) | 3291082..3291891 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| FS836_RS16220 (3292140) | 3292140..3293420 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| FS836_RS16225 (3293443) | 3293443..3293916 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| FS836_RS16230 (3293927) | 3293927..3294706 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| FS836_RS16235 (3294696) | 3294696..3295574 | + | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| FS836_RS16240 (3295592) | 3295592..3296026 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.001 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.008 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.008 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.009 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.008 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.004 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |