MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP038857 Location: 625158..636832 Organism: Escherichia coli strain PigCaeca_2 Replicon: chromosome
Accession: NZ_CP038857 Location: 625158..636832 Organism: Escherichia coli strain PigCaeca_2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5285_RS03010 () | 620159..620593 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| E5285_RS03015 () | 620611..621489 | - | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| E5285_RS03020 () | 621479..622258 | - | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| E5285_RS03025 () | 622269..622742 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| E5285_RS03030 () | 622765..624045 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| E5285_RS03035 () | 624294..625103 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| E5285_RS03040 () | 625158..625622 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| E5285_RS03045 () | 625622..625957 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| E5285_RS03050 () | 626106..627677 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| E5285_RS03055 () | 628052..629386 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| E5285_RS03060 () | 629402..630172 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| E5285_RS03065 () | 630202..631092 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| E5285_RS03070 () | 631189..632334 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| E5285_RS03080 () | 633357..634544 | - | 1188 | WP_032301414.1 | YhaC family protein | - |
| E5285_RS03085 () | 634566..635105 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| E5285_RS24590 () | 635361..635579 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| E5285_RS03095 () | 635894..636832 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| E5285_RS03100 () | 636931..637920 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| E5285_RS03105 () | 637942..639273 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| E5285_RS03110 () | 639299..640507 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |