MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP035865 Location: 3993056..4003003 Organism: Escherichia coli strain E275 a Replicon: chromosome
Accession: NZ_CP035865 Location: 3993056..4003003 Organism: Escherichia coli strain E275 a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE34_RS19625 (3988888) | 3988888..3990219 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| EXE34_RS19630 (3990241) | 3990241..3991230 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| EXE34_RS19635 (3991329) | 3991329..3992267 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| EXE34_RS19640 (3992582) | 3992582..3992800 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| EXE34_RS19645 (3993056) | 3993056..3993595 | + | 540 | WP_159382446.1 | protein YhaB | - |
| EXE34_RS19650 (3993617) | 3993617..3994804 | + | 1188 | WP_097437603.1 | YhaC family protein | - |
| EXE34_RS19660 (3995827) | 3995827..3996972 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| EXE34_RS19665 (3997069) | 3997069..3997959 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| EXE34_RS19670 (3997989) | 3997989..3998759 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| EXE34_RS19675 (3998775) | 3998775..4000109 | - | 1335 | WP_159382447.1 | galactarate/glucarate/glycerate transporter GarP | - |
| EXE34_RS19680 (4000484) | 4000484..4002055 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| EXE34_RS19685 (4002204) | 4002204..4002539 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| EXE34_RS19690 (4002539) | 4002539..4003003 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| EXE34_RS19695 (4003058) | 4003058..4003867 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| EXE34_RS19700 (4004116) | 4004116..4005396 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| EXE34_RS19705 (4005419) | 4005419..4005892 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| EXE34_RS19710 (4005903) | 4005903..4006682 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| EXE34_RS19715 (4006672) | 4006672..4007550 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| EXE34_RS19720 (4007568) | 4007568..4008002 | + | 435 | WP_000948814.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |