MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP034658 Location: 3237875..3247822 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Accession: NZ_CP034658 Location: 3237875..3247822 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH78_RS15650 (3233707) | 3233707..3235038 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| EKH78_RS15655 (3235060) | 3235060..3236049 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| EKH78_RS15660 (3236148) | 3236148..3237086 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| EKH78_RS15665 (3237401) | 3237401..3237619 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| EKH78_RS15670 (3237875) | 3237875..3238414 | + | 540 | WP_000675733.1 | protein YhaB | - |
| EKH78_RS15675 (3238436) | 3238436..3239623 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| EKH78_RS15685 (3240646) | 3240646..3241791 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| EKH78_RS15690 (3241888) | 3241888..3242778 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| EKH78_RS15695 (3242808) | 3242808..3243578 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| EKH78_RS15700 (3243594) | 3243594..3244928 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| EKH78_RS15705 (3245303) | 3245303..3246874 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| EKH78_RS15710 (3247023) | 3247023..3247358 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| EKH78_RS15715 (3247358) | 3247358..3247822 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| EKH78_RS15720 (3247877) | 3247877..3248686 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| EKH78_RS15725 (3248935) | 3248935..3250215 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| EKH78_RS15730 (3250238) | 3250238..3250711 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| EKH78_RS15735 (3250722) | 3250722..3251093 | + | 372 | Protein_3111 | PTS sugar transporter subunit IIC | - |
| EKH78_RS15740 (3251089) | 3251089..3251646 | + | 558 | Protein_3112 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |