MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP029180 Location: 2405618..2415565 Organism: Escherichia coli strain H9Ecoli Replicon: chromosome
Accession: NZ_CP029180 Location: 2405618..2415565 Organism: Escherichia coli strain H9Ecoli Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEF50_RS12900 () | 2401456..2402787 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| DEF50_RS12905 () | 2402809..2403798 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| DEF50_RS12910 () | 2403891..2404829 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| DEF50_RS26970 () | 2405144..2405362 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| DEF50_RS12920 () | 2405618..2406157 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| DEF50_RS12925 () | 2406179..2407366 | + | 1188 | Protein_2349 | YhaC family protein | - |
| DEF50_RS12935 () | 2408389..2409534 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| DEF50_RS12940 () | 2409631..2410521 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| DEF50_RS12945 () | 2410551..2411321 | - | 771 | WP_072645090.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| DEF50_RS12950 () | 2411337..2412671 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| DEF50_RS12955 () | 2413046..2414617 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| DEF50_RS12960 () | 2414766..2415101 | + | 336 | WP_072645089.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| DEF50_RS12965 () | 2415101..2415565 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| DEF50_RS12970 () | 2415620..2416429 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| DEF50_RS12980 () | 2416678..2417958 | + | 1281 | WP_072645088.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| DEF50_RS12985 () | 2417981..2418454 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| DEF50_RS12990 () | 2418465..2419244 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| DEF50_RS12995 () | 2419234..2420112 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| DEF50_RS13000 () | 2420130..2420564 | + | 435 | WP_000948842.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |