MGE detailed information
MGE type: Genomic_island MGE length: 11687 bp
Accession: NZ_CP025903 Location: 3627801..3639487 Organism: Escherichia coli strain 300709 Replicon: chromosome
Accession: NZ_CP025903 Location: 3627801..3639487 Organism: Escherichia coli strain 300709 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXV43_RS17995 () | 3623082..3624446 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| CXV43_RS18000 () | 3624518..3624907 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| CXV43_RS18005 () | 3624921..3627119 | - | 2199 | WP_071608102.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| CXV43_RS18010 () | 3627169..3627866 | + | 698 | Protein_3500 | IS1 family transposase | - |
| CXV43_RS18015 () | 3627882..3628751 | - | 870 | Protein_3501 | transcriptional regulator TdcA | - |
| CXV43_RS25495 () | 3629066..3629284 | + | 219 | WP_001737521.1 | transcriptional activator TdcR | - |
| CXV43_RS18025 () | 3629540..3630079 | + | 540 | WP_021530878.1 | hypothetical protein | - |
| CXV43_RS18030 () | 3630101..3631288 | + | 1188 | WP_029392845.1 | YhaC family protein | - |
| CXV43_RS18040 () | 3632311..3633456 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| CXV43_RS18045 () | 3633553..3634443 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| CXV43_RS18050 () | 3634473..3635243 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| CXV43_RS18055 () | 3635259..3636593 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| CXV43_RS18060 () | 3636968..3638539 | + | 1572 | WP_001414016.1 | galactarate dehydratase | - |
| CXV43_RS18065 () | 3638688..3639023 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| CXV43_RS18070 () | 3639023..3639487 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| CXV43_RS18075 () | 3639542..3640351 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| CXV43_RS18080 () | 3640600..3641880 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| CXV43_RS18085 () | 3641903..3642376 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| CXV43_RS18090 () | 3642387..3643166 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| CXV43_RS18095 () | 3643156..3644034 | + | 879 | WP_126125428.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| CXV43_RS18100 () | 3644052..3644486 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |