MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP010152 Location: 3862723..3872669 Organism: Escherichia coli strain D9 Replicon: chromosome
Accession: NZ_CP010152 Location: 3862723..3872669 Organism: Escherichia coli strain D9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG42_RS20205 () | 3858555..3859886 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| RG42_RS20210 () | 3859908..3860897 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| RG42_RS20215 () | 3860996..3861934 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| RG42_RS26930 () | 3862249..3862467 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| RG42_RS20225 () | 3862723..3863262 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| RG42_RS20230 () | 3863284..3864471 | + | 1188 | WP_001774050.1 | YhaC family protein | - |
| RG42_RS20240 () | 3865493..3866638 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| RG42_RS20245 () | 3866735..3867625 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| RG42_RS20250 () | 3867655..3868425 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| RG42_RS20255 () | 3868441..3869775 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| RG42_RS20260 () | 3870150..3871721 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| RG42_RS20265 () | 3871870..3872205 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| RG42_RS20270 () | 3872205..3872669 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| RG42_RS20275 () | 3872724..3873533 | - | 810 | WP_047600733.1 | aga operon transcriptional regulator AgaR | - |
| RG42_RS20285 () | 3873782..3875062 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| RG42_RS20290 () | 3875085..3875558 | + | 474 | WP_073503457.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| RG42_RS20295 () | 3875569..3876348 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| RG42_RS20300 () | 3876338..3877216 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| RG42_RS20305 () | 3877234..3877668 | + | 435 | WP_073503458.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |