MGE detailed information
MGE type: Integron MGE length: 47493 bp
Accession: NC_004603 Location: 1901751..1949243 Organism: Vibrio parahaemolyticus RIMD 2210633 Replicon: chromosome
Accession: NC_004603 Location: 1901751..1949243 Organism: Vibrio parahaemolyticus RIMD 2210633 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VP_RS08560 (VP1782) | 1897541..1899016 | + | 1476 | WP_005477816.1 | sodium:proton antiporter | - |
| VP_RS08565 (VP1783) | 1899108..1899569 | - | 462 | WP_005464485.1 | hypothetical protein | - |
| VP_RS08570 | 1899911..1900357 | + | 447 | Protein_1667 | DUF3291 domain-containing protein | - |
| VP_RS08575 (VP1786) | 1900472..1900744 | + | 273 | WP_005464495.1 | hypothetical protein | - |
| VP_RS08585 (VP1789) | 1902266..1902733 | - | 468 | WP_005464650.1 | cold shock domain-containing protein | - |
| VP_RS08590 (VP1790) | 1902973..1903377 | - | 405 | WP_005477782.1 | GFA family protein | - |
| VP_RS08595 (VP1791) | 1903526..1904041 | - | 516 | WP_005477694.1 | hypothetical protein | - |
| VP_RS08600 (VP1792) | 1904207..1904629 | - | 423 | WP_005477752.1 | hypothetical protein | - |
| VP_RS08605 | 1904777..1905049 | - | 273 | WP_029853404.1 | hypothetical protein | - |
| VP_RS08610 (VP1794) | 1905641..1906186 | - | 546 | WP_005477738.1 | GNAT family N-acetyltransferase | - |
| VP_RS08615 (VP1795) | 1906226..1906318 | - | 93 | WP_011105940.1 | DUF3265 domain-containing protein | - |
| VP_RS08620 (VP1796) | 1906333..1907160 | - | 828 | WP_005477844.1 | hypothetical protein | - |
| VP_RS08625 | 1907126..1907311 | - | 186 | WP_100069991.1 | DUF3265 domain-containing protein | - |
| VP_RS08630 (VP1797) | 1907308..1907679 | - | 372 | WP_005462158.1 | RidA family protein | - |
| VP_RS08635 (VP1798) | 1907817..1908176 | - | 360 | WP_005477812.1 | VOC family protein | - |
| VP_RS08640 | 1908163..1908345 | - | 183 | WP_078532942.1 | DUF3265 domain-containing protein | - |
| VP_RS08650 (VP1801) | 1909835..1910167 | - | 333 | WP_005477784.1 | hypothetical protein | - |
| VP_RS08655 | 1910402..1910494 | - | 93 | WP_072866293.1 | DUF3265 domain-containing protein | - |
| VP_RS23735 | 1910524..1912074 | - | 1551 | WP_005462176.1 | hypothetical protein | - |
| VP_RS08665 | 1912111..1912242 | - | 132 | WP_017420680.1 | DUF3265 domain-containing protein | - |
| VP_RS08670 (VP1803) | 1912730..1912822 | - | 93 | WP_011105944.1 | DUF3265 domain-containing protein | - |
| VP_RS08675 (VP1804) | 1912850..1913230 | - | 381 | WP_005477828.1 | nuclear transport factor 2 family protein | - |
| VP_RS08680 (VP1805) | 1913371..1914153 | - | 783 | WP_005462179.1 | hypothetical protein | - |
| VP_RS08685 | 1914201..1914293 | - | 93 | WP_072866292.1 | DUF3265 domain-containing protein | - |
| VP_RS08690 | 1914308..1914619 | - | 312 | WP_005477810.1 | antibiotic biosynthesis monooxygenase | - |
| VP_RS08695 | 1914764..1915102 | - | 339 | WP_005477736.1 | tRNA-binding protein | - |
| VP_RS08700 (VP1807) | 1915251..1915658 | - | 408 | WP_005466276.1 | OsmC family protein | - |
| VP_RS23700 | 1915708..1915800 | - | 93 | WP_005433818.1 | DUF3265 domain-containing protein | - |
| VP_RS08710 (VP1808) | 1915820..1916500 | - | 681 | WP_005477709.1 | tetratricopeptide repeat protein | - |
| VP_RS08715 | 1917023..1917160 | - | 138 | WP_029795349.1 | DUF3265 domain-containing protein | - |
| VP_RS08720 (VP1812) | 1917688..1918755 | - | 1068 | WP_005477775.1 | toll/interleukin-1 receptor domain-containing protein | - |
| VP_RS08725 (VP1813) | 1918881..1919270 | - | 390 | WP_005490691.1 | hypothetical protein | - |
| VP_RS08730 | 1919308..1919400 | - | 93 | WP_072833112.1 | DUF3265 domain-containing protein | - |
| VP_RS08735 (VP1814) | 1919390..1919866 | - | 477 | WP_017449567.1 | hypothetical protein | - |
| VP_RS08740 | 1919988..1920119 | - | 132 | WP_078532947.1 | DUF3265 domain-containing protein | - |
| VP_RS08745 | 1920199..1920405 | - | 207 | WP_005462168.1 | hypothetical protein | - |
| VP_RS08750 | 1920608..1920700 | - | 93 | WP_017045846.1 | DUF3265 domain-containing protein | - |
| VP_RS08755 (VP1816) | 1920735..1921136 | - | 402 | WP_005483261.1 | HIT family protein | - |
| VP_RS08760 | 1921169..1921285 | - | 117 | WP_161609362.1 | DUF3265 domain-containing protein | - |
| VP_RS08765 (VP1817) | 1921289..1921735 | - | 447 | WP_024699215.1 | hypothetical protein | - |
| VP_RS08770 | 1922313..1922402 | - | 90 | WP_072833196.1 | DUF3265 domain-containing protein | - |
| VP_RS08775 (VP1819) | 1922430..1922810 | - | 381 | WP_005467118.1 | energy transducer TonB | - |
| VP_RS08780 (VP1820) | 1922975..1923244 | - | 270 | WP_005464459.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| VP_RS08785 (VP1821) | 1923237..1923491 | - | 255 | WP_005483180.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| VP_RS08790 (VP1822) | 1923594..1923686 | - | 93 | WP_011105955.1 | DUF3265 domain-containing protein | - |
| VP_RS08795 (VP1823) | 1923710..1924879 | - | 1170 | WP_005483289.1 | hypothetical protein | - |
| VP_RS08800 | 1924843..1924935 | - | 93 | WP_072833197.1 | DUF3265 domain-containing protein | - |
| VP_RS08805 (VP1824) | 1924950..1925483 | - | 534 | WP_005483198.1 | hypothetical protein | - |
| VP_RS08810 | 1925581..1925673 | - | 93 | WP_005464677.1 | DUF3265 domain-containing protein | - |
| VP_RS08815 (VP1825) | 1925696..1926466 | - | 771 | WP_005464405.1 | CBS domain-containing protein | - |
| VP_RS08820 (VP1826) | 1926537..1927358 | - | 822 | WP_005464673.1 | DUF1669 domain-containing protein | - |
| VP_RS23585 | 1927333..1927473 | - | 141 | WP_162828790.1 | hypothetical protein | - |
| VP_RS08830 (VP1827) | 1927502..1928044 | - | 543 | WP_005464345.1 | GNAT family N-acetyltransferase | - |
| VP_RS23705 | 1928077..1928166 | - | 90 | WP_072833190.1 | DUF3265 domain-containing protein | - |
| VP_RS08840 (VP1828) | 1928198..1928470 | - | 273 | WP_005462157.1 | nicotinamide mononucleotide transporter | - |
| VP_RS08845 | 1928497..1928664 | - | 168 | WP_078532952.1 | DUF3265 domain-containing protein | - |
| VP_RS08850 (VP1829) | 1928666..1928950 | + | 285 | WP_005483268.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| VP_RS08855 (VP1830) | 1928947..1929225 | + | 279 | WP_005483280.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| VP_RS08860 | 1929254..1929364 | - | 111 | WP_082798391.1 | DUF3265 domain-containing protein | - |
| VP_RS08865 (VP1831) | 1929372..1929656 | - | 285 | WP_005483310.1 | nucleotide pyrophosphohydrolase | - |
| VP_RS08870 | 1929701..1929823 | - | 123 | WP_078511351.1 | DUF3265 domain-containing protein | - |
| VP_RS08875 (VP1832) | 1929820..1930296 | - | 477 | WP_005483302.1 | GNAT family N-acetyltransferase | - |
| VP_RS08880 (VP1833) | 1930324..1930425 | - | 102 | WP_011105959.1 | DUF3265 domain-containing protein | - |
| VP_RS08885 (VP1834) | 1930441..1930726 | - | 286 | Protein_1729 | nucleotide pyrophosphohydrolase | - |
| VP_RS08890 | 1930888..1931355 | - | 468 | WP_005464650.1 | cold shock domain-containing protein | - |
| VP_RS08895 | 1931456..1931533 | - | 78 | WP_072833152.1 | DUF3265 domain-containing protein | - |
| VP_RS08900 (VP1835) | 1931562..1931936 | - | 375 | WP_005483170.1 | hypothetical protein | - |
| VP_RS08905 | 1932074..1932583 | - | 510 | WP_005483274.1 | hypothetical protein | VF |
| VP_RS08910 (VP1838) | 1933192..1933284 | - | 93 | WP_011105963.1 | DUF3265 domain-containing protein | - |
| VP_RS08915 (VP1839) | 1933312..1933824 | - | 513 | WP_024699234.1 | hypothetical protein | - |
| VP_RS08920 (VP1840) | 1933966..1934547 | - | 582 | WP_005483293.1 | hypothetical protein | - |
| VP_RS08925 | 1934575..1934697 | - | 123 | WP_021451208.1 | DUF3265 domain-containing protein | - |
| VP_RS08930 (VP1841) | 1934681..1935319 | - | 639 | WP_005483241.1 | hypothetical protein | - |
| VP_RS08935 | 1935348..1935439 | - | 92 | Protein_1739 | DUF3265 domain-containing protein | - |
| VP_RS08940 (VP1842) | 1935516..1935800 | + | 285 | WP_005483196.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| VP_RS08945 (VP1843) | 1935797..1936075 | + | 279 | WP_005483176.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| VP_RS08950 | 1936104..1936220 | - | 117 | WP_080931826.1 | DUF3265 domain-containing protein | - |
| VP_RS08955 (VP1844) | 1936227..1936748 | - | 522 | WP_005483288.1 | GNAT family N-acetyltransferase | - |
| VP_RS08960 (VP1845) | 1936887..1937561 | - | 675 | WP_005483207.1 | hypothetical protein | - |
| VP_RS08965 (VP1847) | 1937695..1938093 | - | 399 | WP_005483218.1 | DUF1311 domain-containing protein | - |
| VP_RS08970 (VP1848) | 1938305..1938979 | - | 675 | WP_005483286.1 | hypothetical protein | - |
| VP_RS08975 | 1939126..1939398 | - | 273 | WP_029853404.1 | hypothetical protein | - |
| VP_RS08980 (VP1849) | 1939537..1939776 | - | 240 | WP_005483258.1 | hypothetical protein | - |
| VP_RS08985 | 1939913..1940002 | - | 90 | WP_072833189.1 | DUF3265 domain-containing protein | - |
| VP_RS08990 (VP1850) | 1940031..1940447 | - | 417 | WP_021451209.1 | GNAT family N-acetyltransferase | - |
| VP_RS08995 | 1940492..1940584 | - | 93 | WP_072833185.1 | DUF3265 domain-containing protein | - |
| VP_RS09000 (VP1851) | 1940599..1941237 | - | 639 | WP_005483174.1 | EcsC family protein | - |
| VP_RS09005 | 1941364..1941456 | - | 93 | WP_072833197.1 | DUF3265 domain-containing protein | - |
| VP_RS09010 (VP1852) | 1941471..1942004 | - | 534 | WP_005483198.1 | hypothetical protein | - |
| VP_RS09015 | 1942102..1942194 | - | 93 | WP_017045846.1 | DUF3265 domain-containing protein | - |
| VP_RS09020 | 1942229..1942630 | - | 402 | WP_005483261.1 | HIT family protein | - |
| VP_RS09025 (VP1853) | 1942771..1943598 | - | 828 | WP_005483178.1 | TIGR02391 family protein | - |
| VP_RS09030 (VP1854) | 1943745..1944152 | - | 408 | WP_005490677.1 | hypothetical protein | - |
| VP_RS09035 | 1944186..1944296 | - | 111 | WP_154581842.1 | DUF3265 domain-containing protein | - |
| VP_RS09040 (VP1855) | 1944293..1944835 | - | 543 | WP_005483282.1 | hypothetical protein | - |
| VP_RS09045 (VP1856) | 1944811..1944933 | - | 123 | WP_011105972.1 | hypothetical protein | - |
| VP_RS09050 (VP1858) | 1945048..1945227 | - | 180 | WP_005483243.1 | DUF645 family protein | - |
| VP_RS09055 (VP1860) | 1945526..1946035 | - | 510 | WP_005483274.1 | hypothetical protein | VF |
| VP_RS09060 | 1946064..1946180 | - | 117 | WP_005483184.1 | DUF3265 domain-containing protein | - |
| VP_RS09065 (VP1861) | 1946182..1946640 | - | 459 | WP_005483220.1 | GNAT family N-acetyltransferase | - |
| VP_RS09070 | 1946643..1946762 | - | 120 | Protein_1766 | DUF3265 domain-containing protein | - |
| VP_RS09075 (VP1862) | 1946780..1947415 | - | 636 | WP_005483168.1 | LysE family transporter | - |
| VP_RS09080 (VP1864) | 1947586..1947999 | - | 414 | WP_005483188.1 | VOC family protein | - |
| VP_RS09085 (VP1865) | 1948281..1949243 | + | 963 | WP_011105976.1 | IS91 family transposase ISWz1 | Transposase |
| VP_RS09090 (VP1866) | 1949294..1949767 | - | 474 | WP_005458833.1 | DUF2947 domain-containing protein | - |
| VP_RS09095 (VP1867) | 1949781..1950368 | - | 588 | WP_005458832.1 | HD domain-containing protein | - |
| VP_RS09100 (VP1868) | 1950370..1950954 | - | 585 | WP_005458831.1 | ribosomal protein S5-alanine N-acetyltransferase | - |
| VP_RS09105 (VP1869) | 1950990..1952534 | - | 1545 | WP_005483314.1 | transcriptional regulator TyrR | - |
| VP_RS09110 (VP1870) | 1952635..1953675 | - | 1041 | WP_005483263.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Vibrio parahaemolyticus strain FDAARGOS_191 | Integron | TA74678, TA74679, TA74680 | NZ_CP020427 | 3215326..3262818 | 0 | |
| Vibrio parahaemolyticus strain VPD14 | Integron | TA110058, TA110059, TA110060 | NZ_CP031781 | 1322242..1369149 | 0 | |
| Vibrio parahaemolyticus strain RMDVP1 | Integron | TA253628, TA253629, TA253630 | NZ_CP102434 | 1327052..1373959 | 0 |