Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01047  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii Ab04-mff |
| Replicon (RefSeq) | chromosome (NZ_CP012006) |
| Location | 2447950..2479599 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ACX61_RS11715 | 2443024..2444202 | - | 1179 | WP_034129561.1 | cyanate transporter | ||
| ACX61_RS11720 | 2444202..2444684 | - | 483 | WP_000646731.1 | nucleoside deaminase | ||
| ACX61_RS11725 | 2444700..2445368 | - | 669 | WP_001232208.1 | ankyrin repeat domain-containing protein | ||
| ACX61_RS11730 | 2445520..2446371 | + | 852 | WP_000460187.1 | LysR family transcriptional regulator | ||
| ACX61_RS11735 | 2446374..2447327 | - | 954 | WP_002037029.1 | M15 family metallopeptidase | ||
| ACX61_RS11740 | 2447335..2447937 | - | 603 | WP_000046446.1 | hypothetical protein | ||
| T6CP013554 | TssL | ACX61_RS11745 (icmH) | 2447950..2448756 | - | 807 | WP_000083629.1 | type IVB secretion system protein IcmH/DotU |
| T6CP013555 | TssK | ACX61_RS11750 (tssK) | 2448774..2450138 | - | 1365 | WP_000471447.1 | type VI secretion system baseplate subunit TssK |
| T6CP013556 | TssA | ACX61_RS11755 (tssA) | 2450155..2451249 | - | 1095 | WP_034129560.1 | type VI secretion system protein TssA |
| T6CP013557 | TssH | ACX61_RS11760 (tssH) | 2451273..2453954 | - | 2682 | WP_086225856.1 | type VI secretion system ATPase TssH |
| ACX61_RS11765 | 2454174..2454437 | - | 264 | WP_000168111.1 | PAAR domain-containing protein | ||
| ACX61_RS11770 | 2454454..2455221 | - | 768 | WP_001072410.1 | OmpA family protein | ||
| ACX61_RS11775 (tagF) | 2455224..2456183 | - | 960 | WP_000557244.1 | type VI secretion system-associated protein TagF | ||
| T6CP013558 | TssM | ACX61_RS11780 (tssM) | 2456221..2460045 | - | 3825 | WP_034129559.1 | type VI secretion system membrane subunit TssM |
| ACX61_RS11785 | 2460076..2461488 | - | 1413 | WP_031958290.1 | hypothetical protein | ||
| T6CP013559 | TssG | ACX61_RS11790 (tssG) | 2461485..2462483 | - | 999 | WP_031958289.1 | type VI secretion system baseplate subunit TssG |
| T6CP013560 | TssF | ACX61_RS11795 (tssF) | 2462447..2464258 | - | 1812 | WP_031958288.1 | type VI secretion system baseplate subunit TssF |
| T6CP013561 | TssE | ACX61_RS11800 (tssE) | 2464275..2464751 | - | 477 | WP_001047031.1 | type VI secretion system baseplate subunit TssE |
| T6CP013562 | TssD | ACX61_RS11805 | 2464831..2465334 | - | 504 | WP_000653195.1 | type VI secretion system tube protein Hcp |
| T6CP013563 | TssC | ACX61_RS11810 (tssC) | 2465384..2466865 | - | 1482 | WP_001066523.1 | type VI secretion system contractile sheath large subunit |
| T6CP013564 | TssB | ACX61_RS11815 (tssB) | 2466858..2467361 | - | 504 | WP_001119042.1 | type VI secretion system contractile sheath small subunit |
| ACX61_RS11820 | 2467378..2468070 | - | 693 | WP_000869711.1 | hypothetical protein | ||
| ACX61_RS11825 | 2468811..2469008 | + | 198 | WP_005111318.1 | hypothetical protein | ||
| ACX61_RS11830 | 2469043..2469747 | + | 705 | WP_077109274.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| ACX61_RS11835 | 2470003..2470908 | - | 906 | WP_034129558.1 | sel1 repeat family protein | ||
| ACX61_RS11840 | 2470925..2471707 | - | 783 | WP_000523381.1 | hypothetical protein | ||
| ACX61_RS11845 | 2471711..2472004 | - | 294 | WP_002037038.1 | hypothetical protein | ||
| ACX61_RS11850 | 2472018..2472494 | - | 477 | WP_002009182.1 | hypothetical protein | ||
| ACX61_RS11855 | 2472498..2473274 | - | 777 | WP_000864764.1 | hypothetical protein | ||
| ACX61_RS11860 | 2473276..2476029 | - | 2754 | WP_034129565.1 | hypothetical protein | ||
| ACX61_RS11865 | 2476034..2476972 | - | 939 | WP_000059480.1 | hypothetical protein | ||
| T6CP013565 | TssI | ACX61_RS11870 | 2476969..2479599 | - | 2631 | WP_005120102.1 | type VI secretion system tip protein VgrG |
| ACX61_RS11875 | 2479745..2480146 | + | 402 | WP_000043351.1 | hypothetical protein | ||
| ACX61_RS11880 | 2480242..2481186 | + | 945 | WP_000542529.1 | ABC transporter permease | ||
| ACX61_RS11885 | 2481186..2482067 | + | 882 | WP_001000083.1 | ABC transporter ATP-binding protein | ||
| ACX61_RS11890 | 2482119..2483141 | - | 1023 | WP_000592888.1 | ABC transporter substrate-binding protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0360 |
ACX61_19655 (tetR2) | protein | Global regulator | Acinetobacter baumannii strain Ab04-mff | plasmid (NZ_CP012007) | 144108..144677 (+) | 446104352 | hcp secretion (↑) |
| REG0361 |
ACX61_19615 (tetR1) | protein | Global regulator | Acinetobacter baumannii strain Ab04-mff | plasmid (NZ_CP012007) | 139526..140098 (+) | 487938137 | hcp secretion (↑) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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