Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01047  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii Ab04-mff |
| Replicon (RefSeq) | chromosome (NZ_CP012006) |
| Location | 2447950..2479599 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ACX61_RS11715 | 2443024..2444202 | - | 1179 | WP_034129561.1 | cyanate transporter | ||
| ACX61_RS11720 | 2444202..2444684 | - | 483 | WP_000646731.1 | nucleoside deaminase | ||
| ACX61_RS11725 | 2444700..2445368 | - | 669 | WP_001232208.1 | ankyrin repeat domain-containing protein | ||
| ACX61_RS11730 | 2445520..2446371 | + | 852 | WP_000460187.1 | LysR family transcriptional regulator | ||
| ACX61_RS11735 | 2446374..2447327 | - | 954 | WP_002037029.1 | M15 family metallopeptidase | ||
| ACX61_RS11740 | 2447335..2447937 | - | 603 | WP_000046446.1 | hypothetical protein | ||
| T6CP013554 | TssL | ACX61_RS11745 (icmH) | 2447950..2448756 | - | 807 | WP_000083629.1 | type IVB secretion system protein IcmH/DotU |
| T6CP013555 | TssK | ACX61_RS11750 (tssK) | 2448774..2450138 | - | 1365 | WP_000471447.1 | type VI secretion system baseplate subunit TssK |
| T6CP013556 | TssA | ACX61_RS11755 (tssA) | 2450155..2451249 | - | 1095 | WP_034129560.1 | type VI secretion system protein TssA |
| T6CP013557 | TssH | ACX61_RS11760 (tssH) | 2451273..2453954 | - | 2682 | WP_086225856.1 | type VI secretion system ATPase TssH |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0360 | ACX61_19655 (tetR2) | protein | Global regulator | Acinetobacter baumannii strain Ab04-mff | plasmid (NZ_CP012007) | 144108..144677 (+) | 446104352 | hcp secretion (↑) |
| REG0361 | ACX61_19615 (tetR1) | protein | Global regulator | Acinetobacter baumannii strain Ab04-mff | plasmid (NZ_CP012007) | 139526..140098 (+) | 487938137 | hcp secretion (↑) |
Showing 1 to 2 of 2 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||