Detailed information of component protein


Summary

Component ID T6CP013556
Component protein type TssA
T6SS ID (Type) T6SS01047 insolico (Type i4b)
Strain Acinetobacter baumannii Ab04-mff
Replicon chromosome
Sequence Protein sequence (365 a.a.); Nucleotide sequence (1095 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX61_RS11755
Coordinate (Strand) 2450155..2451249 (-)
NCBI ID WP_034129560.1
RefSeq NZ_CP012006
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 5.2e-32 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 365 a.a.    

>T6CP013556 NZ_CP012006:c2451249-2450155 [Acinetobacter baumannii] [TssA]
MSIDISELLKPINDSLLCGEDYSFSNEFHEIKKARTQDDLLLDQGDWVAERKQADWDFVAKSVSTLLIEKTKDIRLLTWV
IEAWTHLNGFEGMVKGITLTHTMLNQYWQDIHPIIEDDDLDQRIGLLQGLINQLPMLLKKVPLTNTAPYYNLLDYDNFLY
HENIRRKQTEEYESQSGPSELEQFDQAIFNTSKTFQYSNYQEFTSVLTEWNVLKQTLDHLMGLDSPSFAAIDSAFETIHS
TLRKIYKAEAFGTGLAPSQEQAAVITTPSMEKQVPVQIVSDQPMFQPQAQTHLANREQAMKVLQEIADYFQANEPHSPVS
YMLQKTIKWSQMPLHEWLAQVIKDEHPLQMVQEMLGVQPKNEYE*

  Nucleotide sequence: 1095 bp    

>T6CP013556 NZ_CP012006:c2451249-2450155 [Acinetobacter baumannii] [TssA]
ATGAGTATTGATATTTCTGAACTACTTAAACCCATTAATGACAGCTTACTTTGTGGTGAGGATTATTCATTTTCTAATGA
ATTTCACGAGATAAAGAAAGCCAGAACACAGGATGATCTATTATTAGATCAGGGGGATTGGGTTGCTGAACGGAAGCAGG
CAGATTGGGACTTTGTTGCGAAGAGTGTAAGCACTTTGCTCATTGAAAAAACCAAAGATATCCGTCTATTAACTTGGGTA
ATAGAAGCCTGGACTCATCTAAATGGTTTTGAAGGCATGGTAAAGGGAATCACTTTAACTCATACCATGCTGAACCAATA
TTGGCAGGATATTCATCCGATTATTGAAGATGATGATTTGGATCAGCGTATTGGTTTATTACAAGGACTTATTAATCAGT
TGCCAATGCTGTTGAAGAAAGTACCTTTAACTAACACAGCTCCTTATTATAACTTGCTTGATTACGATAATTTTCTATAT
CACGAAAATATACGCCGTAAGCAAACAGAAGAGTACGAGAGTCAGTCAGGTCCATCTGAATTAGAACAATTTGATCAAGC
GATCTTTAATACCTCTAAAACCTTTCAATACTCAAATTATCAAGAGTTTACTTCGGTTTTAACGGAGTGGAATGTTTTAA
AACAGACACTCGACCATTTAATGGGATTAGATTCACCGAGTTTTGCTGCAATTGATTCTGCATTTGAGACAATACACAGC
ACTTTACGTAAAATTTACAAAGCAGAGGCTTTTGGTACTGGGCTTGCGCCGAGTCAAGAACAGGCCGCTGTCATCACGAC
ACCGTCTATGGAAAAACAAGTGCCTGTACAAATCGTATCAGACCAGCCTATGTTTCAGCCACAAGCACAAACTCACTTGG
CCAATCGCGAGCAAGCAATGAAAGTGCTGCAAGAAATAGCTGATTATTTTCAAGCAAATGAGCCACATAGTCCTGTGAGC
TATATGCTCCAAAAGACCATTAAATGGAGCCAAATGCCGCTGCATGAATGGTTAGCACAAGTGATTAAAGATGAGCATCC
ATTGCAAATGGTTCAGGAAATGTTAGGTGTTCAACCTAAAAATGAATATGAATAA