Detailed information of component protein


Summary

Component ID T6CP013555
Component protein type TssK
T6SS ID (Type) T6SS01047 insolico (Type i4b)
Strain Acinetobacter baumannii Ab04-mff
Replicon chromosome
Sequence Protein sequence (455 a.a.); Nucleotide sequence (1365 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACX61_RS11750
Coordinate (Strand) 2448774..2450138 (-)
NCBI ID WP_000471447.1
RefSeq NZ_CP012006
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.5e-126 19..451
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 455 a.a.    

>T6CP013555 NZ_CP012006:c2450138-2448774 [Acinetobacter baumannii] [TssK]
MFKAEKVLWGEGLFLRPQHFQIQDTYHEQRLNHTVRAVVPFSYGVQKLSFDEAQLSTHILALESVEMIWQDGEIYQAPAY
DLLPEPILLDELNLRGEMVIYLALPLLQANKQNLIDQNQSQKGRYQSHLVETHDLFTNATEADISLLRRRAVFKLLDAHS
NPDHNLDGFLYLPIGKIKRQSSGAFEIDRKFIPPILHVDASETLVSNLKRTLNVIKAKIKTIQTNNRENEQKLIEFRSGD
IVSFWLVNALNTAHAGLSHFLQYPQIHPERLFFELLRLAGSLLTFSTAYEVDQLPAYKHHNLQESFTQLDTILRDLLDTI
ISSRYISIALKEIRPSYWVGSLETDKITRDTRLYIAVSSSVMQTHELIQIVPLRFKIGSTLDVEQRVVAALPAIPLHHLI
QVPTAIPVRSGVSYFEIEPHHELYQRMLDSETICIYVPAGFQDISIELIAVMNA*

  Nucleotide sequence: 1365 bp    

>T6CP013555 NZ_CP012006:c2450138-2448774 [Acinetobacter baumannii] [TssK]
ATGTTTAAAGCTGAAAAAGTCCTGTGGGGCGAAGGTTTATTTTTAAGACCTCAACATTTCCAGATTCAAGATACCTATCA
TGAACAACGTTTAAATCATACGGTTCGTGCTGTTGTGCCATTTTCCTATGGCGTTCAAAAACTTAGTTTTGATGAAGCAC
AGTTAAGTACGCATATTCTTGCACTTGAATCAGTAGAAATGATTTGGCAAGACGGTGAAATATATCAAGCGCCTGCTTAT
GACTTATTACCTGAACCTATTTTGCTTGATGAGCTTAATTTACGTGGTGAAATGGTCATCTATTTGGCATTACCATTATT
ACAAGCCAATAAACAAAATTTAATCGATCAAAATCAATCACAAAAGGGGCGCTATCAATCACATTTGGTTGAGACCCATG
ATCTGTTCACAAACGCGACAGAGGCTGATATCAGCTTATTACGTCGTCGAGCTGTGTTTAAATTATTAGATGCACATAGT
AATCCTGATCATAATTTAGATGGTTTCCTGTATTTGCCAATAGGCAAAATTAAACGTCAGAGTTCAGGTGCTTTTGAAAT
TGACCGCAAATTTATTCCGCCCATTTTGCATGTCGATGCATCTGAGACCTTGGTTTCAAATTTAAAAAGAACCTTGAATG
TTATTAAGGCAAAAATTAAAACGATTCAAACCAATAACCGAGAAAATGAGCAGAAATTAATTGAATTCCGTTCAGGTGAT
ATCGTTTCGTTTTGGTTGGTAAATGCTTTAAATACTGCTCATGCTGGTCTGAGCCATTTCTTGCAATATCCGCAAATTCA
TCCGGAACGCTTATTCTTTGAATTGCTACGTTTGGCAGGTTCATTATTAACTTTCTCGACAGCTTATGAAGTTGATCAGT
TGCCTGCATATAAACATCATAATTTGCAAGAGAGCTTCACCCAGCTCGACACAATTTTACGTGATTTACTCGATACGATT
ATTTCGAGTCGTTACATCAGTATTGCCCTTAAAGAAATTCGCCCTTCATATTGGGTGGGAAGTCTCGAAACCGATAAGAT
TACTCGAGATACCAGACTTTATATTGCTGTATCAAGTAGCGTGATGCAGACCCATGAGTTGATTCAAATCGTTCCTCTAC
GTTTTAAAATCGGTAGTACTTTAGATGTTGAACAACGTGTTGTTGCAGCATTACCAGCAATTCCATTACACCACTTAATC
CAAGTTCCGACTGCTATTCCAGTACGTTCGGGTGTGAGCTATTTTGAAATCGAACCGCATCATGAACTCTATCAACGTAT
GTTGGATTCAGAAACGATTTGTATTTATGTTCCGGCTGGATTCCAAGATATCAGTATTGAGCTGATTGCGGTCATGAACG
CTTAA