Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00541  |
| T6SS type | Type i1 |
| Strain | Pseudomonas fluorescens F113 |
| Replicon (RefSeq) | chromosome (NC_016830) |
| Location | 6708823..6729449 |
| Function | - |
| Comment | - |
| References | [1] Redondo-Nieto M et al (2013) Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics. 14:54. [PudMed:23350846] [2] Barret M et al (2011) Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | Sfa2 | Stk1 | Stp1 | TssA | TssB | TssC | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PSF113_RS59895 | 6704352..6705017 | + | 666 | WP_014340895.1 | hypothetical protein | ||
| PSF113_RS59900 | 6705413..6705991 | + | 579 | WP_014340896.1 | plasmid pRiA4b ORF-3 family protein | ||
| PSF113_RS59905 | 6706601..6706960 | + | 360 | WP_041476206.1 | hypothetical protein | ||
| T6CP012525 | Stk1 | PSF113_RS59910 | 6707172..6708104 | - | 933 | WP_014340898.1 | serine/threonine protein kinase |
| T6CP012526 | Stp1 | PSF113_RS59915 | 6708101..6708823 | - | 723 | WP_014340899.1 | serine/threonine-protein phosphatase |
| T6CP005740 | TssM | PSF113_RS59920 (tssM) | 6708823..6712266 | - | 3444 | WP_014340900.1 | type VI secretion system membrane subunit TssM |
| T6CP005741 | TssL | PSF113_RS59925 (icmH) | 6712280..6713143 | - | 864 | WP_014340901.1 | type IVB secretion system protein IcmH/DotU |
| T6CP005742 | TssK | PSF113_RS59930 (tssK) | 6713149..6714480 | - | 1332 | WP_014340902.1 | type VI secretion system baseplate subunit TssK |
| T6CP005743 | TssJ | PSF113_RS59935 (tssJ) | 6714477..6714980 | - | 504 | WP_014340903.1 | type VI secretion system lipoprotein TssJ |
| T6CP011979 | FHA | PSF113_RS59940 (tagH) | 6714986..6715837 | - | 852 | WP_014340904.1 | type VI secretion system-associated FHA domain protein TagH |
| PSF113_RS59945 | 6715857..6715997 | - | 141 | WP_041476208.1 | hypothetical protein | ||
| T6CP012527 | Sfa2 | PSF113_RS59950 | 6716055..6717572 | - | 1518 | WP_014340905.1 | sigma-54-dependent Fis family transcriptional regulator |
| T6CP005744 | TssH | PSF113_RS59955 (tssH) | 6717583..6720168 | - | 2586 | WP_014340906.1 | type VI secretion system ATPase TssH |
| T6CP005745 | TssG | PSF113_RS59960 (tssG) | 6720180..6721184 | - | 1005 | WP_014340907.1 | type VI secretion system baseplate subunit TssG |
| T6CP005746 | TssF | PSF113_RS59965 (tssF) | 6721148..6722935 | - | 1788 | WP_014340908.1 | type VI secretion system baseplate subunit TssF |
| T6CP008974 | TssE | PSF113_RS59970 (tssE) | 6722942..6723352 | - | 411 | WP_014340909.1 | type VI secretion system baseplate subunit TssE |
| T6CP005747 | TssC | PSF113_RS59975 (tssC) | 6723361..6724836 | - | 1476 | WP_014340910.1 | type VI secretion system contractile sheath large subunit |
| T6CP005748 | TssB | PSF113_RS59980 (tssB) | 6724862..6725365 | - | 504 | WP_014340911.1 | type VI secretion system contractile sheath small subunit |
| T6CP008975 | TssA | PSF113_RS59985 (tssA) | 6725398..6726954 | - | 1557 | WP_014340912.1 | type VI secretion system protein TssA |
| T6CP005749 | TssI | PSF113_RS59990 | 6727385..6729448 | + | 2064 | WP_014340913.1 | type VI secretion system tip protein VgrG |
| PSF113_RS59995 | 6729445..6730299 | + | 855 | WP_014340914.1 | DUF4123 domain-containing protein | ||
| PSF113_RS60000 | 6730296..6731066 | + | 771 | WP_014340915.1 | hypothetical protein | ||
| PSF113_RS60005 | 6731079..6733262 | + | 2184 | WP_014340916.1 | lipase family protein | ||
| PSF113_RS60010 | 6733871..6734230 | + | 360 | WP_041476209.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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