Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PSF113_RS59915 |
Coordinate (Strand) | 6708101..6708823 (-) |
NCBI ID | WP_014340899.1 |
RefSeq | NC_016830 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
PP2C_2 | PF13672.8 | 1.7e-14 | 20..226 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-240 | MEAGPWYSAARTDPGKTRPRNEDAFLDCPQQGMWAVADGMGGHSGGDIASQLIVANLTELPLYRDLAERSKAVRQCLRWTNRRLSQELTVTDDHPGIIGSTVVALLLEGNRGVCIWAGDSRCYLWRGRRLYQLTKDHSLQQQLIDTQRISRDEACAHPAAKALTRAVGAAPELTLEVLELDVHAGDTFLLCSDGLYQGLGAQALGSALDLASPRVALEHLFDDVLRGPARDNLTAVVVRP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9798 | - | - |
Protein sequence: 241 a.a.
>T6CP012526 NC_016830:c6708823-6708101 [Pseudomonas fluorescens F113] [Stp1]
MEAGPWYSAARTDPGKTRPRNEDAFLDCPQQGMWAVADGMGGHSGGDIASQLIVANLTELPLYRDLAERSKAVRQCLRWT
NRRLSQELTVTDDHPGIIGSTVVALLLEGNRGVCIWAGDSRCYLWRGRRLYQLTKDHSLQQQLIDTQRISRDEACAHPAA
KALTRAVGAAPELTLEVLELDVHAGDTFLLCSDGLYQGLGAQALGSALDLASPRVALEHLFDDVLRGPARDNLTAVVVRP
*
MEAGPWYSAARTDPGKTRPRNEDAFLDCPQQGMWAVADGMGGHSGGDIASQLIVANLTELPLYRDLAERSKAVRQCLRWT
NRRLSQELTVTDDHPGIIGSTVVALLLEGNRGVCIWAGDSRCYLWRGRRLYQLTKDHSLQQQLIDTQRISRDEACAHPAA
KALTRAVGAAPELTLEVLELDVHAGDTFLLCSDGLYQGLGAQALGSALDLASPRVALEHLFDDVLRGPARDNLTAVVVRP
*
Nucleotide sequence: 723 bp
>T6CP012526 NC_016830:c6708823-6708101 [Pseudomonas fluorescens F113] [Stp1]
ATGGAGGCCGGCCCCTGGTACAGCGCCGCGCGCACGGACCCTGGCAAGACCCGGCCACGTAATGAGGATGCTTTTCTCGA
TTGCCCACAACAGGGGATGTGGGCGGTGGCCGACGGCATGGGTGGCCACTCGGGGGGTGACATTGCCAGCCAGCTGATCG
TTGCCAACTTGACGGAGCTGCCGCTGTACCGGGACTTGGCTGAGCGTTCGAAAGCGGTGCGCCAATGCCTGCGCTGGACC
AACCGACGACTGAGCCAGGAGCTTACCGTCACCGACGATCATCCCGGCATTATCGGCAGCACCGTGGTGGCGCTGTTGTT
GGAAGGAAACCGTGGAGTCTGCATCTGGGCGGGCGACAGCCGTTGTTATCTGTGGCGGGGTCGGCGACTGTACCAACTGA
CCAAGGACCACTCACTGCAACAGCAACTGATCGACACGCAACGCATCAGTCGCGATGAGGCCTGTGCCCATCCTGCGGCC
AAGGCACTGACCCGCGCGGTCGGTGCCGCCCCAGAGTTGACGCTGGAGGTGTTGGAGCTGGATGTTCACGCGGGCGATAC
GTTCTTGCTGTGCAGTGACGGCCTGTACCAAGGCCTTGGCGCGCAAGCCCTTGGCAGTGCCTTGGACCTGGCTTCGCCGC
GCGTGGCGTTGGAACATCTTTTCGACGACGTTCTACGTGGCCCGGCACGGGATAACCTGACGGCCGTGGTGGTCCGCCCG
TGA
ATGGAGGCCGGCCCCTGGTACAGCGCCGCGCGCACGGACCCTGGCAAGACCCGGCCACGTAATGAGGATGCTTTTCTCGA
TTGCCCACAACAGGGGATGTGGGCGGTGGCCGACGGCATGGGTGGCCACTCGGGGGGTGACATTGCCAGCCAGCTGATCG
TTGCCAACTTGACGGAGCTGCCGCTGTACCGGGACTTGGCTGAGCGTTCGAAAGCGGTGCGCCAATGCCTGCGCTGGACC
AACCGACGACTGAGCCAGGAGCTTACCGTCACCGACGATCATCCCGGCATTATCGGCAGCACCGTGGTGGCGCTGTTGTT
GGAAGGAAACCGTGGAGTCTGCATCTGGGCGGGCGACAGCCGTTGTTATCTGTGGCGGGGTCGGCGACTGTACCAACTGA
CCAAGGACCACTCACTGCAACAGCAACTGATCGACACGCAACGCATCAGTCGCGATGAGGCCTGTGCCCATCCTGCGGCC
AAGGCACTGACCCGCGCGGTCGGTGCCGCCCCAGAGTTGACGCTGGAGGTGTTGGAGCTGGATGTTCACGCGGGCGATAC
GTTCTTGCTGTGCAGTGACGGCCTGTACCAAGGCCTTGGCGCGCAAGCCCTTGGCAGTGCCTTGGACCTGGCTTCGCCGC
GCGTGGCGTTGGAACATCTTTTCGACGACGTTCTACGTGGCCCGGCACGGGATAACCTGACGGCCGTGGTGGTCCGCCCG
TGA