Detailed information of component protein


Summary

Component ID T6CP005742
Component protein type TssK
T6SS ID (Type) T6SS00541 insolico (Type i1)
Strain Pseudomonas fluorescens F113
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSF113_RS59930
Coordinate (Strand) 6713149..6714480 (-)
NCBI ID WP_014340902.1
RefSeq NC_016830
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.4e-138 18..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MNHDKVVWQEGMLLRPQHLQHNDRYFDHQLKVRTRLLASYAWGFLALEIDLQFLNMGQLVVSQASGVLPDGSLFELGGNTEPLALEVPSNTSNTPIYLALPLVTGNHIESRRPEQSDVLARYTIYDAQVTDSNAGDSGGSQISCGRPDLRLLLGEQQSDHAFVKLKLCEVLDTTADGLIRLDPDFVPTFIQARSSHYLLSCLKEIIGMLAHRGDSLAERIRFNGKAGGAQVGDFMMLQLINRSELLLRHYLDLEQVHPETLYRMLLALLGELATFSSDSKRPPLTNRYQHSDQGACFRSLMQAIRQVLSMVLEQHAIELQLQPRQYGITVSPMQDLTLLDTASFVLAASANCDSEELRHRLPSNLKVGSVERIRQLVNLHLPGIKIRPLPVAPRQIAFHANKTYFILEPSSEDLAQLKRSAGFAFHVCGDFAELELNFWAIRN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9939 - -


  Protein sequence: 444 a.a.    

>T6CP005742 NC_016830:c6714480-6713149 [Pseudomonas fluorescens F113] [TssK]
MNHDKVVWQEGMLLRPQHLQHNDRYFDHQLKVRTRLLASYAWGFLALEIDLQFLNMGQLVVSQASGVLPDGSLFELGGNT
EPLALEVPSNTSNTPIYLALPLVTGNHIESRRPEQSDVLARYTIYDAQVTDSNAGDSGGSQISCGRPDLRLLLGEQQSDH
AFVKLKLCEVLDTTADGLIRLDPDFVPTFIQARSSHYLLSCLKEIIGMLAHRGDSLAERIRFNGKAGGAQVGDFMMLQLI
NRSELLLRHYLDLEQVHPETLYRMLLALLGELATFSSDSKRPPLTNRYQHSDQGACFRSLMQAIRQVLSMVLEQHAIELQ
LQPRQYGITVSPMQDLTLLDTASFVLAASANCDSEELRHRLPSNLKVGSVERIRQLVNLHLPGIKIRPLPVAPRQIAFHA
NKTYFILEPSSEDLAQLKRSAGFAFHVCGDFAELELNFWAIRN*

  Nucleotide sequence: 1332 bp    

>T6CP005742 NC_016830:c6714480-6713149 [Pseudomonas fluorescens F113] [TssK]
ATGAATCACGATAAAGTCGTCTGGCAAGAAGGCATGTTGTTGCGTCCACAACATTTGCAACACAACGATCGTTATTTCGA
TCACCAGTTGAAGGTTCGTACCCGGTTGCTGGCCAGTTACGCCTGGGGATTCCTGGCGCTGGAAATCGATCTGCAATTTC
TCAACATGGGCCAACTGGTGGTCAGCCAGGCCAGCGGGGTCCTGCCGGACGGCAGCCTGTTCGAGCTCGGTGGCAACACC
GAGCCGTTGGCCCTGGAAGTACCGTCCAATACCAGCAATACACCGATCTACCTCGCGCTGCCATTGGTGACCGGCAACCA
CATCGAGTCCCGTCGTCCGGAGCAATCTGATGTGCTGGCGCGCTACACCATCTACGACGCGCAGGTGACCGACTCCAACG
CCGGCGATTCCGGCGGGAGCCAGATCAGTTGTGGCCGGCCGGACCTGCGCCTGCTGTTGGGCGAGCAACAGAGCGACCAT
GCGTTTGTGAAGCTCAAGCTCTGTGAGGTGCTCGATACCACTGCTGATGGGCTGATCAGGCTCGACCCGGACTTTGTGCC
AACCTTCATCCAGGCTCGTTCATCCCATTATTTGCTGTCGTGTCTCAAGGAGATCATCGGCATGCTTGCCCATCGGGGTG
ACAGCCTTGCCGAGCGGATCCGCTTCAATGGCAAGGCCGGTGGTGCGCAAGTGGGCGATTTCATGATGCTGCAACTAATC
AATCGTAGCGAACTGTTGCTACGTCATTATCTGGATCTGGAGCAAGTACATCCCGAAACACTCTACCGAATGCTACTGGC
CCTGTTGGGTGAACTGGCGACGTTCTCCAGTGACAGCAAGCGTCCACCGCTCACCAACCGCTACCAGCACAGCGACCAGG
GCGCATGTTTTCGAAGCCTGATGCAGGCGATCCGCCAGGTGCTGTCGATGGTGCTCGAGCAGCACGCTATCGAGCTGCAA
TTGCAGCCGCGCCAATATGGAATCACCGTCTCGCCGATGCAGGACCTCACCCTGCTGGATACGGCTTCATTCGTACTGGC
GGCTAGCGCCAACTGTGACAGCGAAGAGTTGCGCCATCGACTGCCGTCGAACCTCAAGGTTGGCTCGGTGGAGCGCATCC
GCCAGTTGGTCAACCTGCATCTGCCCGGTATCAAGATCAGGCCTCTGCCCGTGGCTCCGCGGCAGATCGCATTCCATGCC
AACAAAACCTATTTCATCCTGGAGCCCAGCTCCGAAGACCTGGCGCAACTGAAGCGCTCGGCAGGCTTCGCGTTCCATGT
GTGCGGTGATTTCGCGGAGCTTGAACTGAATTTTTGGGCCATCAGGAATTGA