SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP011979
Component protein type	FHA
T6SS ID (Type)	T6SS00541 (Type i1)
Strain	Pseudomonas fluorescens F113
Replicon	chromosome
Sequence	Protein sequence (284 a.a.); Nucleotide sequence (852 bp)
Reference	[1] Barret M, Egan F, Fargier E, et al. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology (Reading). 2011 Jun;157(Pt 6):1726-1739. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7. PMID: 21474537 [2] Redondo-Nieto M, Barret M, Morrissey J, et al. Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics. 2013 Jan 25;14:54. doi: 10.1186/1471-2164-14-54. PMID: 23350846

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PSF113_RS59940
Coordinate (Strand)	6714986..6715837 (-)
NCBI ID	WP_014340904.1
RefSeq	NC_016830
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
FHA	PF00498.28	6.4e-10	29..93

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-283	MDLVFEMLNANQFVPVRLFHKTFGPAGGVIGRGEGCHWMIPDRDRLLSNCHAQVSFREGAFFLTDTSGNGTTHRESGARLPKGEPVRIQDGDAYIMGEFEVLARLVVGPSSSVAEAARSTSVDSLIPDDAFLELDPLKALDQQERVLLDIDELINPTAVPPDTLGRPDYARIDMESLLLPELVEELVEPRPAPIPRANAMDHPREDFWERFAIALGMDLESLDSEARETLAINAALLLKQSIHGLQQSLRTRSELKGEPRLTQTQTYEEQVRLIASLQIDHHG

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9863	-	-

Protein sequence: 284 a.a.

						>T6CP011979 NC_016830:c6715837-6714986 [Pseudomonas fluorescens F113] [FHA]
MDLVFEMLNANQFVPVRLFHKTFGPAGGVIGRGEGCHWMIPDRDRLLSNCHAQVSFREGAFFLTDTSGNGTTHRESGARL
PKGEPVRIQDGDAYIMGEFEVLARLVVGPSSSVAEAARSTSVDSLIPDDAFLELDPLKALDQQERVLLDIDELINPTAVP
PDTLGRPDYARIDMESLLLPELVEELVEPRPAPIPRANAMDHPREDFWERFAIALGMDLESLDSEARETLAINAALLLKQ
SIHGLQQSLRTRSELKGEPRLTQTQTYEEQVRLIASLQIDHHG*					

Nucleotide sequence: 852 bp

						>T6CP011979 NC_016830:c6715837-6714986 [Pseudomonas fluorescens F113] [FHA]
ATGGATCTTGTTTTCGAAATGCTGAACGCCAACCAGTTCGTCCCTGTACGGCTGTTTCACAAGACTTTCGGACCGGCCGG
CGGAGTGATTGGTCGGGGCGAGGGCTGCCACTGGATGATCCCTGACCGCGACCGCCTGCTGTCCAACTGTCACGCGCAGG
TCAGCTTCCGTGAGGGCGCGTTTTTCCTGACCGATACCAGTGGCAACGGTACGACCCACCGCGAAAGCGGTGCGCGCCTG
CCCAAGGGCGAGCCGGTACGGATACAGGACGGAGACGCCTACATCATGGGTGAATTCGAGGTCCTGGCGCGCCTGGTCGT
CGGGCCGTCGAGCAGCGTTGCCGAAGCCGCTCGCTCAACGTCGGTCGACAGTCTCATTCCGGACGATGCCTTTCTGGAAC
TCGACCCGCTGAAAGCACTGGACCAACAGGAGCGGGTCTTGCTGGACATCGATGAGCTGATAAATCCCACTGCCGTACCA
CCAGACACCCTTGGGCGCCCAGATTATGCGCGTATCGACATGGAAAGCCTGCTGTTGCCGGAGTTGGTCGAAGAGCTCGT
TGAACCAAGGCCTGCGCCCATCCCTCGTGCCAACGCTATGGATCACCCGCGCGAAGATTTTTGGGAGCGCTTCGCTATTG
CCCTCGGCATGGATCTCGAAAGCCTTGATAGCGAGGCCCGCGAAACCCTGGCGATCAATGCAGCGCTGCTGCTCAAGCAA
AGCATCCATGGTTTGCAGCAGAGCTTGCGTACCCGCTCGGAGTTGAAAGGCGAACCGCGCCTGACCCAGACCCAGACCTA
TGAAGAACAGGTTCGTCTGATTGCCAGCCTGCAAATCGATCACCACGGATGA					