Detailed information of component protein


Summary

Component ID T6CP005740
Component protein type TssM
T6SS ID (Type) T6SS00541 insolico (Type i1)
Strain Pseudomonas fluorescens F113
Replicon chromosome
Sequence Protein sequence (1148 a.a.); Nucleotide sequence (3444 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 6708823..6712266 (-)
NCBI ID WP_014340900.1
RefSeq NC_016830
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MKLLFRKAGAWVRQTW
Transmembrane helix 17-39 IWTLLAVLCIALLVWFAGPLLAV
Outside 40-48 NDYKFWASP
Transmembrane helix 49-71 TARLLTVSVLMLCWGLAMVFVNG
Inside 72-423 RGGSSANFQQNAPEQARALHQARIDDERREVRSRFKQALSTLRSSSLYPGRSERWRNDLPWYLLIGPPASGKTRLLDCSGLEFPLDKLERKPIGDTSGTRYCDWYFAEHAVLVDTAGRYLTQTDSDVDSSAWTVLLELLRKRRRSRPLSGVLVTVPTEVLLLGSEDEVTTLARQIRGRLQELQQRLHVDVPVYLVLSKADGVPGFNEFFDSLTREENDQVLGASFSRDQRGSDVAVLRAEFEALLHRLNSQVIMRMHQERDPLRRSCMLDFPHQLGQLGAGLCLLVEQAFTGNVGTLRGFYLTSASPPGRTNTAPDRRSRFINHLVSRVIFPEADLTDLVQRERRRLHWGQR
Transmembrane helix 424-446 ALYLGALTVVGLCGLLWANGFSA
Outside 447-1147 NHERLDNLRTLAQRWDQQQSSQANADDWVAILDSLDIRFEATRVFPPDRAVPLHERVGLYQGDASNPAVTDAYERELQARLLPKVAQRLEAHVRNNWNDREQLLNSLRAYLMLGLQERRDVAWLKVWLANDGSLRHPGNTALQEGLNAHLERLLELPFIHALNEPLVAQAREALRRESLAVVVYRMLHEQASHLPQYRFSQHLGSQGALLVGTDRMIPGFYTRQGYERYFSVQGTALVTELLRDNWVLGEGEGLSGMDMRRLMVELEQLYFRDYADHWSEAVGQVALQTISNAGEGAEQLAGLTSAHSPILRMLVQVREHTRIQAVAEQIDDLTQAAGNGGHAVTTLAAVAGKASASLAENLPDTAQKSLRRRFEPLHRLLDPDNAPTADLVQALRAIDEVQLQLANLARASAPEQAAFELARHRMGGQRDALSHLRGASARLPRPVSAWFNVMAEDSWRLVLNDSYRYLNQRYQSELYSFYGKAINKRYPFSAHSASDVALNDFREFFKDQGIVDRFFDNYMQPFVSGSAGHYRLRSIDGQSLPMSRVYLDQMATAHTIRRSFFAENPTEPQVQFKLEPYTLDPAVSRAEFRFGDQMLEYRHGPILPVAFTWPSDAQNGRTALVLDKMVGRGVGIEKNTGAWSLFRLFDLMQSEYLTGRDVRVLKADLGGLRANYLLTSQRTPNPFDMSVLRTFRLPVQL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9824 - -


  Protein sequence: 1148 a.a.    


  Nucleotide sequence: 3444 bp