Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00111  |
| T6SS type | Type i3 |
| Strain | Burkholderia thailandensis E264 |
| Replicon (RefSeq) | chromosome II (NC_007650) |
| Location | 137720..169613 |
| Function | - |
| Comment | - |
| References | [1] Russell AB et al (2012) A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 11(5):538-49. [PudMed:22607806] [2] Schwarz S et al (2010) Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 6(8):e1001068. [PudMed:20865170] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagJ | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BTH_RS00590 | 132907..133461 | + | 555 | WP_011400800.1 | type 1 fimbrial protein | ||
| BTH_RS00595 | 133543..134268 | + | 726 | WP_011400801.1 | fimbria/pilus periplasmic chaperone | ||
| BTH_RS34170 | 134317..134475 | - | 159 | WP_162465482.1 | hypothetical protein | ||
| BTH_RS00600 | 134428..137124 | + | 2697 | WP_009894721.1 | fimbrial biogenesis outer membrane usher protein | ||
| BTH_RS00605 | 137117..137689 | + | 573 | WP_025988574.1 | type 1 fimbrial protein | ||
| T6CP009345 | TssL | BTH_RS00610 | 137720..138409 | + | 690 | WP_009907089.1 | DotU family type IV/VI secretion system protein |
| T6CP011369 | TagL | BTH_RS00615 | 138412..140088 | + | 1677 | WP_009894727.1 | OmpA family protein |
| T6CP001036 | TssB | BTH_RS00620 (tssB) | 140432..140971 | + | 540 | WP_009894728.1 | type VI secretion system contractile sheath small subunit |
| T6CP001037 | TssC | BTH_RS00625 (tssC) | 141005..142504 | + | 1500 | WP_009894729.1 | type VI secretion system contractile sheath large subunit |
| T6CP001038 | TssD | BTH_RS00630 | 142705..143187 | + | 483 | WP_009894730.1 | type VI secretion system tube protein Hcp |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||