Detailed information of component protein


Summary

Component ID T6CP001037
Component protein type TssC
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00625
Coordinate (Strand) 141005..142504 (+)
NCBI ID WP_009894729.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1e-135 68..371
VipB_2 PF18945.2 8.4e-46 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MAARESQARSADAQLATQSDFNALLSREFKPKTEQAREAVEHAVKTLAEQALANSVTLSDDAYKSIEAIIGEIDRKLSEQINLILHHDDFQKLESAWRGLHHLVTNTETDEKLKIRFMDVSKDDLRRTMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPYGCLVADYYFDHTPPDVDLLSSIGKVAAAAHAPFITGASPSVLQMDSWQELANPRDLTKIFTQNLEYAPWNSLRNSEDARYIGLAMPRFLARLPYGIRTNPVDEFDFEESTDGSDHRKYVWANAAYAMAVNVNRSFKHYGWCTLIRGVESGGVVENLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKEREDMQQWLNEWIMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLEGLTVSLRLVAKLPSVKEAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9902 - -


  Protein sequence: 500 a.a.    

>T6CP001037 NC_007650:141005-142504 [Burkholderia thailandensis E264] [TssC]
MAARESQARSADAQLATQSDFNALLSREFKPKTEQAREAVEHAVKTLAEQALANSVTLSDDAYKSIEAIIGEIDRKLSEQ
INLILHHDDFQKLESAWRGLHHLVTNTETDEKLKIRFMDVSKDDLRRTMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPYG
CLVADYYFDHTPPDVDLLSSIGKVAAAAHAPFITGASPSVLQMDSWQELANPRDLTKIFTQNLEYAPWNSLRNSEDARYI
GLAMPRFLARLPYGIRTNPVDEFDFEESTDGSDHRKYVWANAAYAMAVNVNRSFKHYGWCTLIRGVESGGVVENLPCHTF
PTDDGGIDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRF
AHYLKCIVRDKIGSFKEREDMQQWLNEWIMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLE
GLTVSLRLVAKLPSVKEAA*

  Nucleotide sequence: 1500 bp    

>T6CP001037 NC_007650:141005-142504 [Burkholderia thailandensis E264] [TssC]
ATGGCTGCACGTGAATCTCAGGCGCGCTCCGCCGACGCACAGCTCGCTACGCAATCGGACTTCAACGCACTGCTGTCGCG
CGAGTTCAAACCGAAGACCGAACAGGCGCGCGAGGCGGTGGAACACGCCGTCAAGACGCTGGCCGAGCAGGCGCTCGCCA
ATTCGGTGACGTTGTCGGACGACGCATACAAGAGCATCGAAGCGATCATCGGCGAGATCGATCGAAAGCTGTCCGAGCAG
ATCAATCTGATTCTGCATCACGACGATTTCCAGAAACTGGAAAGCGCGTGGCGCGGCCTGCATCACCTGGTGACGAATAC
CGAGACGGACGAGAAGCTGAAGATCCGCTTCATGGACGTCTCCAAGGACGATCTGCGTCGTACGATGAAGCGATACAAGG
GCGTGGCCTGGGACCAGAGCCCGTTTTTCAAGCAGATCTACGAAGAGGAATACGGTCAGCTCGGCGGCGAGCCGTATGGG
TGCCTCGTGGCCGATTACTACTTCGATCACACGCCGCCGGACGTCGATCTGCTTTCGTCGATCGGCAAGGTGGCGGCCGC
CGCGCACGCTCCGTTCATTACCGGCGCATCGCCGTCGGTACTCCAGATGGATTCGTGGCAGGAGTTGGCCAATCCGCGCG
ACCTCACGAAGATCTTCACGCAGAACCTCGAATATGCGCCGTGGAATTCGCTGCGCAATTCCGAAGACGCACGTTACATC
GGTCTCGCGATGCCGCGTTTCCTTGCGCGCTTGCCGTATGGGATCAGAACGAACCCCGTCGACGAATTCGATTTCGAGGA
ATCGACGGACGGTTCCGATCATCGCAAGTACGTGTGGGCGAATGCCGCGTATGCAATGGCGGTCAACGTTAATCGCTCGT
TCAAGCATTACGGCTGGTGCACGCTGATCCGCGGCGTCGAAAGCGGCGGCGTCGTCGAGAACCTGCCGTGCCACACGTTC
CCGACGGACGACGGCGGCATCGACATGAAGTGTCCGACCGAAATCGCGATCTCGGATCGCCGCGAGGCGGAGCTCGCGAA
GAACGGCTTCATTCCGCTGATTCATCGAAAGAACACCGACTACGCCGCGTTCATCGGCGCGCAATCGCTGCAGAAGCCGG
CCGAGTACTACGACCCGGATGCGACCGCGAATGCGAACTTGTCCGCCCGCCTGCCGTACCTGTTCGCATGCTCGCGCTTC
GCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTCAAGGAGCGCGAAGACATGCAGCAGTGGCTCAACGA
ATGGATCATGAACTATGTCGACGCCGACCCGGCGAACTCGTCGCAGGAGACCAAGGCGCGCCGTCCGCTGGCCGCGGCCG
AAGTGGTTGTCGAAGACGTGGAAGGCAATCCGGGCTACTACCAGGCGAAGTTCTTCCTGCGTCCGCACTTCCAGCTGGAA
GGGTTGACCGTGTCGCTGCGTCTCGTCGCGAAGCTGCCCTCGGTCAAGGAAGCGGCGTAA