Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00620 |
Coordinate (Strand) | 140432..140971 (+) |
NCBI ID | WP_009894728.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VipA | PF05591.14 | 2e-58 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-179 | MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPAAQQAENRESKEKH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9954 | - | - |
Protein sequence: 180 a.a.
>T6CP001036 NC_007650:140432-140971 [Burkholderia thailandensis E264] [TssB]
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEPLPAVGDRKFFSIDIDNFDERMKAMKPR
VAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALA
KAPKPAAQQAENRESKEKH*
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEPLPAVGDRKFFSIDIDNFDERMKAMKPR
VAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALA
KAPKPAAQQAENRESKEKH*
Nucleotide sequence: 540 bp
>T6CP001036 NC_007650:140432-140971 [Burkholderia thailandensis E264] [TssB]
ATGGCTATATCCAATAGCTCACAGAAATTTATCGCGCGCAATCGTGCGCCTCGCGTCCAGATCGAATACGACGTCGAGAT
TTACGGTTCCGAAAAGAAAGTCGAGCTTCCTTTCGTGATGGGCGTGCTTGCGGACCTGTCGGGCAAGCCGATCGAGCCTT
TGCCGGCTGTCGGCGACCGCAAGTTCTTCAGCATCGATATCGACAATTTCGACGAGCGCATGAAGGCAATGAAGCCGCGT
GTCGCGTTCTCGGTGCCGAACACCCTTTCCGGCGACGGTCAGTTGATGGTCGACATCACGTTCGAAAGCATGGACGACTT
TTCCCCCGCGGCGATCGCGAAGAAGGTGGACGCGTTGTCGCAATTGCTGGACGCACGCACGCAGCTTGCCAATCTGCAGA
CCTACATGGACGGAAAGTCGGGTGCGGAGAACCTCGTGAGCAAGGTGCTCAAGGACCCCGCGCTGCTCAGCGCGCTCGCG
AAGGCGCCGAAGCCTGCGGCGCAACAGGCGGAAAACCGGGAATCGAAGGAAAAGCACTGA
ATGGCTATATCCAATAGCTCACAGAAATTTATCGCGCGCAATCGTGCGCCTCGCGTCCAGATCGAATACGACGTCGAGAT
TTACGGTTCCGAAAAGAAAGTCGAGCTTCCTTTCGTGATGGGCGTGCTTGCGGACCTGTCGGGCAAGCCGATCGAGCCTT
TGCCGGCTGTCGGCGACCGCAAGTTCTTCAGCATCGATATCGACAATTTCGACGAGCGCATGAAGGCAATGAAGCCGCGT
GTCGCGTTCTCGGTGCCGAACACCCTTTCCGGCGACGGTCAGTTGATGGTCGACATCACGTTCGAAAGCATGGACGACTT
TTCCCCCGCGGCGATCGCGAAGAAGGTGGACGCGTTGTCGCAATTGCTGGACGCACGCACGCAGCTTGCCAATCTGCAGA
CCTACATGGACGGAAAGTCGGGTGCGGAGAACCTCGTGAGCAAGGTGCTCAAGGACCCCGCGCTGCTCAGCGCGCTCGCG
AAGGCGCCGAAGCCTGCGGCGCAACAGGCGGAAAACCGGGAATCGAAGGAAAAGCACTGA