Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00610 |
Coordinate (Strand) | 137720..138409 (+) |
NCBI ID | WP_009907089.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
DotU | PF09850.11 | 1.1e-25 | 10..202 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-229 | MSIGMPAQSLRMLLQDTMLHVALLTEGARISRVHDWRARCIALVRQFEQAMQDGGYRGGIANELGLAQCVLLDEMTMRNLSPEQKEEWLRELLQFRFHSTRDGLGQVRARVDRLSSAHSANTELLEMYSLFYEFGLLEDRKGAALAGALASEAKPALGKKTAKAPEIWNESGPSDEAAHGRPWRIVGSLLAFAALMTMWLVIDARLSREVEQMGVTSTDEATIRPESGD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9846 | - | - |
Protein sequence: 230 a.a.
>T6CP009345 NC_007650:137720-138409 [Burkholderia thailandensis E264] [TssL]
MSIGMPAQSLRMLLQDTMLHVALLTEGARISRVHDWRARCIALVRQFEQAMQDGGYRGGIANELGLAQCVLLDEMTMRNL
SPEQKEEWLRELLQFRFHSTRDGLGQVRARVDRLSSAHSANTELLEMYSLFYEFGLLEDRKGAALAGALASEAKPALGKK
TAKAPEIWNESGPSDEAAHGRPWRIVGSLLAFAALMTMWLVIDARLSREVEQMGVTSTDEATIRPESGD*
MSIGMPAQSLRMLLQDTMLHVALLTEGARISRVHDWRARCIALVRQFEQAMQDGGYRGGIANELGLAQCVLLDEMTMRNL
SPEQKEEWLRELLQFRFHSTRDGLGQVRARVDRLSSAHSANTELLEMYSLFYEFGLLEDRKGAALAGALASEAKPALGKK
TAKAPEIWNESGPSDEAAHGRPWRIVGSLLAFAALMTMWLVIDARLSREVEQMGVTSTDEATIRPESGD*
Nucleotide sequence: 690 bp
>T6CP009345 NC_007650:137720-138409 [Burkholderia thailandensis E264] [TssL]
ATGTCGATTGGAATGCCCGCGCAATCGCTGCGCATGTTGTTGCAGGACACGATGCTCCACGTCGCGCTATTGACGGAAGG
CGCGCGCATATCGCGCGTACATGACTGGCGCGCGCGTTGCATCGCGCTCGTCAGGCAATTCGAGCAGGCGATGCAGGACG
GCGGCTATCGCGGCGGCATTGCAAACGAATTGGGTCTCGCGCAATGCGTGTTGCTCGACGAAATGACGATGCGCAATCTG
TCGCCCGAGCAAAAGGAGGAATGGTTGCGCGAGCTTCTCCAATTCCGTTTCCACTCGACTCGTGATGGGCTTGGCCAAGT
GCGCGCGCGTGTCGATCGACTTTCCAGCGCGCATTCGGCGAATACCGAGTTGCTGGAAATGTATTCGTTGTTCTACGAGT
TTGGTCTTCTGGAAGACAGGAAAGGGGCCGCGTTGGCCGGCGCGCTGGCGTCGGAGGCGAAGCCGGCGCTCGGAAAGAAA
ACCGCGAAAGCGCCGGAGATTTGGAATGAGAGCGGTCCATCGGACGAAGCGGCGCACGGGCGGCCTTGGCGAATCGTCGG
CAGCCTGCTGGCGTTTGCCGCGCTCATGACGATGTGGCTCGTCATCGATGCACGTTTGAGTCGTGAGGTGGAGCAGATGG
GCGTCACGTCCACGGATGAAGCAACGATTCGTCCGGAATCGGGGGATTGA
ATGTCGATTGGAATGCCCGCGCAATCGCTGCGCATGTTGTTGCAGGACACGATGCTCCACGTCGCGCTATTGACGGAAGG
CGCGCGCATATCGCGCGTACATGACTGGCGCGCGCGTTGCATCGCGCTCGTCAGGCAATTCGAGCAGGCGATGCAGGACG
GCGGCTATCGCGGCGGCATTGCAAACGAATTGGGTCTCGCGCAATGCGTGTTGCTCGACGAAATGACGATGCGCAATCTG
TCGCCCGAGCAAAAGGAGGAATGGTTGCGCGAGCTTCTCCAATTCCGTTTCCACTCGACTCGTGATGGGCTTGGCCAAGT
GCGCGCGCGTGTCGATCGACTTTCCAGCGCGCATTCGGCGAATACCGAGTTGCTGGAAATGTATTCGTTGTTCTACGAGT
TTGGTCTTCTGGAAGACAGGAAAGGGGCCGCGTTGGCCGGCGCGCTGGCGTCGGAGGCGAAGCCGGCGCTCGGAAAGAAA
ACCGCGAAAGCGCCGGAGATTTGGAATGAGAGCGGTCCATCGGACGAAGCGGCGCACGGGCGGCCTTGGCGAATCGTCGG
CAGCCTGCTGGCGTTTGCCGCGCTCATGACGATGTGGCTCGTCATCGATGCACGTTTGAGTCGTGAGGTGGAGCAGATGG
GCGTCACGTCCACGGATGAAGCAACGATTCGTCCGGAATCGGGGGATTGA