Detailed information of component protein


Summary

Component ID T6CP011369
Component protein type TagL
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (559 a.a.); Nucleotide sequence (1677 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00615
Coordinate (Strand) 138412..140088 (+)
NCBI ID WP_009894727.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 7.4e-19 441..537
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MSRQIR
Transmembrane helix 7-29 FWLVWGAIPFVVLASLCLPLSMQ
Outside 30-32 PEW
Transmembrane helix 33-52 SHVLTIVLIIAAVVLAIEIF
Inside 53-331 ERFRETRQDRTVEAEIDDHELAVIIVAGPHASSLFNSKGDDAMLRREAGALWLRADNVEQFRETMARIKASRGRFPDAAVVPLVSESDDESEMRQAFSKWRTELRESLCYPDAAYVLPCYLAVYTCLGFKGGDSARPKWTGDAIEIGAGQMNAASKVGELLAAIRQQLLRPSRTGSSARCALGLGAFDWLDATALLSSMSALANTPPFMLKGLTLADVGRQPVRPGAWTRWLTVRTGLHIRRPQSSTSPLPVPRVTKVAESGIREGWSSARNIVSARAS
Transmembrane helix 332-354 FVPALVFSTVSTLGIAVAVSAWM
Outside 355-558 NGRMIQRVATDMADYRSAPDEWIGKKRFAQARLEHDRTTIVDTLLNGVPAGLGWGLYRGQELLVKLDMALVSPRGESTAMQLDTVTLFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSDSAGSDAVNLQLSKARARAIRDWFVDQGVLKTRFIVQGAGDTHPVADNASPLGRAQNRRVEILLIPDVASDRTAIETEL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8442 - -


  Protein sequence: 559 a.a.    

>T6CP011369 NC_007650:138412-140088 [Burkholderia thailandensis E264] [TagL]
MSRQIRFWLVWGAIPFVVLASLCLPLSMQPEWSHVLTIVLIIAAVVLAIEIFERFRETRQDRTVEAEIDDHELAVIIVAG
PHASSLFNSKGDDAMLRREAGALWLRADNVEQFRETMARIKASRGRFPDAAVVPLVSESDDESEMRQAFSKWRTELRESL
CYPDAAYVLPCYLAVYTCLGFKGGDSARPKWTGDAIEIGAGQMNAASKVGELLAAIRQQLLRPSRTGSSARCALGLGAFD
WLDATALLSSMSALANTPPFMLKGLTLADVGRQPVRPGAWTRWLTVRTGLHIRRPQSSTSPLPVPRVTKVAESGIREGWS
SARNIVSARASFVPALVFSTVSTLGIAVAVSAWMNGRMIQRVATDMADYRSAPDEWIGKKRFAQARLEHDRTTIVDTLLN
GVPAGLGWGLYRGQELLVKLDMALVSPRGESTAMQLDTVTLFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSD
SAGSDAVNLQLSKARARAIRDWFVDQGVLKTRFIVQGAGDTHPVADNASPLGRAQNRRVEILLIPDVASDRTAIETEL*

  Nucleotide sequence: 1677 bp    

>T6CP011369 NC_007650:138412-140088 [Burkholderia thailandensis E264] [TagL]
ATGTCGCGTCAGATTCGATTTTGGCTCGTGTGGGGCGCTATCCCCTTCGTGGTGCTCGCGAGCCTCTGCCTGCCGTTGAG
CATGCAGCCGGAGTGGTCTCATGTGCTGACGATCGTTCTGATCATTGCCGCCGTCGTGCTGGCGATCGAAATATTCGAAC
GCTTTCGCGAGACGAGGCAGGATCGAACGGTCGAAGCCGAAATCGACGATCACGAACTGGCGGTGATCATCGTGGCCGGG
CCTCACGCATCGTCGCTTTTCAATAGCAAGGGAGACGATGCGATGCTTCGGCGCGAAGCCGGCGCGCTATGGCTGCGCGC
GGATAACGTCGAGCAGTTTCGAGAAACGATGGCGCGCATCAAGGCGTCGCGCGGCCGTTTTCCGGACGCCGCGGTGGTGC
CGCTCGTATCGGAAAGCGACGACGAAAGCGAAATGAGGCAGGCGTTCTCGAAGTGGCGAACCGAACTGCGCGAATCGCTT
TGCTACCCCGATGCGGCCTATGTTCTGCCTTGCTATCTCGCTGTCTACACGTGCCTTGGATTCAAGGGAGGCGACAGCGC
GCGTCCAAAGTGGACGGGCGATGCAATAGAAATCGGTGCAGGGCAGATGAATGCCGCGTCGAAGGTAGGTGAGCTGCTTG
CGGCGATTCGGCAACAACTGCTTCGGCCGTCGCGAACCGGTTCGTCGGCGCGGTGCGCGTTGGGGCTCGGGGCGTTCGAC
TGGCTCGATGCCACGGCGCTGCTGTCGTCGATGTCCGCGCTCGCGAATACGCCGCCATTCATGCTGAAGGGACTGACGCT
CGCGGATGTGGGCAGACAGCCGGTACGGCCGGGAGCATGGACGCGCTGGCTGACCGTTCGGACCGGTCTTCATATCCGCC
GGCCCCAATCGTCGACGTCGCCGCTTCCCGTGCCGCGCGTGACGAAGGTCGCCGAAAGCGGCATTCGGGAAGGATGGAGC
AGTGCGCGCAATATCGTTTCCGCTCGCGCGAGTTTCGTGCCGGCCCTCGTGTTTTCCACCGTCTCGACGCTTGGCATCGC
CGTCGCGGTTTCCGCCTGGATGAATGGACGCATGATCCAGCGGGTGGCGACCGACATGGCCGATTATCGGAGCGCACCCG
ATGAGTGGATCGGCAAGAAGCGCTTCGCGCAGGCCCGCCTCGAACACGATCGCACCACGATCGTGGATACCCTGCTCAAT
GGGGTGCCGGCCGGGCTCGGCTGGGGGCTCTATCGCGGGCAGGAGTTGCTGGTCAAGCTCGATATGGCGCTGGTTTCGCC
GCGCGGGGAGTCGACCGCGATGCAGCTCGACACGGTGACGCTGTTTGCGACCGGCCAGGCGACGTTTTCTCCGGGCGCCG
CGCAGCGCGAATTGCAACATGCATTGCGAATGATCCTCGCCAATCCGGAGCAACGCGTTCTGATCGTCGGGCATTCCGAC
AGCGCCGGATCGGACGCGGTCAATCTCCAACTGTCCAAAGCGCGCGCGCGTGCAATCCGTGACTGGTTCGTGGATCAAGG
CGTGCTGAAGACGCGCTTCATCGTGCAAGGGGCCGGCGACACGCATCCGGTTGCCGATAACGCCAGCCCCTTGGGCCGTG
CGCAGAACCGCCGTGTCGAGATCCTGCTAATTCCGGACGTTGCTTCGGACAGGACAGCGATCGAGACGGAACTGTAG