Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABDZ23_RS10240 Genome accession   NZ_CP155621
Coordinates   2286224..2287441 (+) Length   405 a.a.
NCBI ID   WP_247269217.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2281224..2292441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS10220 (ABDZ23_10220) - 2282633..2282929 (+) 297 WP_027614107.1 DUF2845 domain-containing protein -
  ABDZ23_RS10225 (ABDZ23_10225) - 2283200..2283556 (-) 357 WP_007963876.1 BON domain-containing protein -
  ABDZ23_RS10230 (ABDZ23_10230) pilA 2283852..2284292 (-) 441 WP_247269215.1 pilin Machinery gene
  ABDZ23_RS10235 (ABDZ23_10235) pilB 2284521..2286221 (+) 1701 WP_346833974.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABDZ23_RS10240 (ABDZ23_10240) pilC 2286224..2287441 (+) 1218 WP_247269217.1 type II secretion system F family protein Machinery gene
  ABDZ23_RS10245 (ABDZ23_10245) pilD 2287443..2288315 (+) 873 WP_096795219.1 A24 family peptidase Machinery gene
  ABDZ23_RS10250 (ABDZ23_10250) coaE 2288312..2288935 (+) 624 WP_346833975.1 dephospho-CoA kinase -
  ABDZ23_RS10255 (ABDZ23_10255) yacG 2288932..2289129 (+) 198 WP_003228296.1 DNA gyrase inhibitor YacG -
  ABDZ23_RS10260 (ABDZ23_10260) - 2289136..2289351 (-) 216 WP_003228298.1 hypothetical protein -
  ABDZ23_RS10265 (ABDZ23_10265) - 2289417..2290106 (-) 690 WP_135296585.1 energy-coupling factor ABC transporter permease -
  ABDZ23_RS10270 (ABDZ23_10270) - 2290224..2290850 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  ABDZ23_RS10275 (ABDZ23_10275) - 2290847..2291374 (+) 528 WP_096795222.1 MOSC domain-containing protein -
  ABDZ23_RS10280 (ABDZ23_10280) - 2291426..2291599 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43997.78 Da        Isoelectric Point: 10.0979

>NTDB_id=998085 ABDZ23_RS10240 WP_247269217.1 2286224..2287441(+) (pilC) [Pseudomonas koreensis strain BM06]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSLLNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKALTYPSAVVLVAMVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISISEFMQQWWWAVLGALIAAVFGIR
HALKKSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFVMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=998085 ABDZ23_RS10240 WP_247269217.1 2286224..2287441(+) (pilC) [Pseudomonas koreensis strain BM06]
ATGGCGGTCAAGGCAGCGAAAATCAGCATCTACGCCTGGGAAGGCACGGATCGCAAAGGCAGCAAAGTCACGGGCGAGTT
GAGCGGGCAGAACCCCGCGCTGATCAAGGCCCAGTTGCGCAAGCAGGGGATCAACCCGGGCAAGGTACGGAAGAAATCCA
CCTCTTTGCTCAACCTCGGCAAACGCATCAAAGCGCAGGACATCGCCCTGTTCACCCGGCAGATGGCAACCATGATGAAA
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGACAACCCGGCGATGCGCAAACTGGTAGACGA
GGTGAAGCAAGAGGTAGCGGCCGGCAACAGCTTCGCCGCCGCACTGCGCAAGAAGCCGCAGTATTTCGATGAACTGTATT
GCAACCTGGTGGATGCCGGCGAGCAATCCGGCGCCCTCGATACGTTGCTTGAGCGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCCTGACCTACCCCAGCGCCGTGGTGCTGGTGGCTATGGTCGTTACCGGGAT
TCTGCTGGTAAAAGTGGTGCCGCAGTTTCAGTCGGTATTTTCCGGCTTCGGCGCTGAATTGCCGGCCTTCACCCTGATGG
TGATCAGTATCTCGGAGTTCATGCAGCAATGGTGGTGGGCGGTGCTTGGTGCGCTGATCGCGGCGGTGTTCGGCATCCGC
CATGCGCTGAAGAAATCCCAGGCATTGCGCGACCGCAAGGACACCTGGCTGCTGAAGCTGCCGCTGGTGGGCACGCTGAT
GTACAAATCGGCAGTGGCGCGATTCGCCCGCACTCTGTCGACTACCTTTGCCGCTGGCGTACCGCTGGTGGAGGCACTGG
ATTCGGTGGCAGGCGCCACGGGCAACGTGGTGTTCAAACGTGCCGTGCTGCGTATCCGCCAGGACGTCGCCACCGGCATG
CAGCTGAATTTTTCCATGCGCAGCACCGGAGTCTTCCCCAACATGGCGGTGCAGATGACCGCCATCGGTGAGGAATCGGG
CGCGCTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGAGGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCGTCATGGTGGTGCTCGGGGTCATCGTCGGCGGGCTGGTCGTGGCCATGTACCTGCCGATCTTCCAG
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Acinetobacter baylyi ADP1

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilC Vibrio cholerae strain A1552

44.949

97.778

0.44
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.284

99.259

0.43
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.155

99.012

0.378

Multiple sequence alignment