Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABDZ23_RS10245 | Genome accession | NZ_CP155621 |
| Coordinates | 2287443..2288315 (+) | Length | 290 a.a. |
| NCBI ID | WP_096795219.1 | Uniprot ID | - |
| Organism | Pseudomonas koreensis strain BM06 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2282443..2293315
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDZ23_RS10220 (ABDZ23_10220) | - | 2282633..2282929 (+) | 297 | WP_027614107.1 | DUF2845 domain-containing protein | - |
| ABDZ23_RS10225 (ABDZ23_10225) | - | 2283200..2283556 (-) | 357 | WP_007963876.1 | BON domain-containing protein | - |
| ABDZ23_RS10230 (ABDZ23_10230) | pilA | 2283852..2284292 (-) | 441 | WP_247269215.1 | pilin | Machinery gene |
| ABDZ23_RS10235 (ABDZ23_10235) | pilB | 2284521..2286221 (+) | 1701 | WP_346833974.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABDZ23_RS10240 (ABDZ23_10240) | pilC | 2286224..2287441 (+) | 1218 | WP_247269217.1 | type II secretion system F family protein | Machinery gene |
| ABDZ23_RS10245 (ABDZ23_10245) | pilD | 2287443..2288315 (+) | 873 | WP_096795219.1 | A24 family peptidase | Machinery gene |
| ABDZ23_RS10250 (ABDZ23_10250) | coaE | 2288312..2288935 (+) | 624 | WP_346833975.1 | dephospho-CoA kinase | - |
| ABDZ23_RS10255 (ABDZ23_10255) | yacG | 2288932..2289129 (+) | 198 | WP_003228296.1 | DNA gyrase inhibitor YacG | - |
| ABDZ23_RS10260 (ABDZ23_10260) | - | 2289136..2289351 (-) | 216 | WP_003228298.1 | hypothetical protein | - |
| ABDZ23_RS10265 (ABDZ23_10265) | - | 2289417..2290106 (-) | 690 | WP_135296585.1 | energy-coupling factor ABC transporter permease | - |
| ABDZ23_RS10270 (ABDZ23_10270) | - | 2290224..2290850 (+) | 627 | WP_003228301.1 | DUF1780 domain-containing protein | - |
| ABDZ23_RS10275 (ABDZ23_10275) | - | 2290847..2291374 (+) | 528 | WP_096795222.1 | MOSC domain-containing protein | - |
| ABDZ23_RS10280 (ABDZ23_10280) | - | 2291426..2291599 (+) | 174 | WP_003228304.1 | DUF3094 family protein | - |
| ABDZ23_RS10285 (ABDZ23_10285) | - | 2291663..2292961 (+) | 1299 | WP_247269219.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32107.38 Da Isoelectric Point: 7.9854
>NTDB_id=998086 ABDZ23_RS10245 WP_096795219.1 2287443..2288315(+) (pilD) [Pseudomonas koreensis strain BM06]
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVVLLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVVLLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=998086 ABDZ23_RS10245 WP_096795219.1 2287443..2288315(+) (pilD) [Pseudomonas koreensis strain BM06]
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGCTGGGTCTGGTGGTCGGCAG
TTTTCTCAATGTACTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTCGGCC
TGCCGAGCGAAACACCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACCTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTTGCCTGGCATTTGGGTTTCGGCTGGCCGGCCGGTC
TGTTGATCGTCCTCACCTGGGGCCTGCTGGCCATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCATTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCGATTGTCGGGGTGGTTCTACTGCGTCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGCTGGGTCTGGTGGTCGGCAG
TTTTCTCAATGTACTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTCGGCC
TGCCGAGCGAAACACCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACCTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTTGCCTGGCATTTGGGTTTCGGCTGGCCGGCCGGTC
TGTTGATCGTCCTCACCTGGGGCCTGCTGGCCATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCATTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCGATTGTCGGGGTGGTTCTACTGCGTCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.546 |
97.241 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
49.813 |
92.069 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
49.813 |
92.069 |
0.459 |
| pilD | Neisseria gonorrhoeae MS11 |
48.519 |
93.103 |
0.452 |