Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABDX87_RS17565 Genome accession   NZ_CP155619
Coordinates   3959120..3960355 (-) Length   411 a.a.
NCBI ID   WP_346829021.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3954120..3965355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS17530 (ABDX87_17530) - 3954182..3954643 (+) 462 WP_346829015.1 hypothetical protein -
  ABDX87_RS17535 (ABDX87_17535) - 3954650..3955549 (-) 900 WP_346829016.1 LysR substrate-binding domain-containing protein -
  ABDX87_RS17540 (ABDX87_17540) - 3955719..3956363 (+) 645 WP_346829017.1 hydrolase -
  ABDX87_RS17545 (ABDX87_17545) - 3956499..3957185 (+) 687 WP_346829018.1 energy-coupling factor ABC transporter permease -
  ABDX87_RS17550 (ABDX87_17550) yacG 3957413..3957616 (-) 204 WP_062378727.1 DNA gyrase inhibitor YacG -
  ABDX87_RS17555 (ABDX87_17555) coaE 3957616..3958248 (-) 633 WP_346829019.1 dephospho-CoA kinase -
  ABDX87_RS17560 (ABDX87_17560) pilD 3958245..3959117 (-) 873 WP_346829020.1 A24 family peptidase Machinery gene
  ABDX87_RS17565 (ABDX87_17565) pilC 3959120..3960355 (-) 1236 WP_346829021.1 type II secretion system F family protein Machinery gene
  ABDX87_RS17570 (ABDX87_17570) pilB 3960357..3962051 (-) 1695 WP_346829022.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABDX87_RS17575 (ABDX87_17575) - 3962124..3962684 (+) 561 WP_346829023.1 pilin -
  ABDX87_RS17585 (ABDX87_17585) nadC 3962988..3963836 (-) 849 WP_346829024.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44691.81 Da        Isoelectric Point: 10.1652

>NTDB_id=998046 ABDX87_RS17565 WP_346829021.1 3959120..3960355(-) (pilC) [Pseudomonas abietaniphila strain BHJ04]
MATKAVKTPKVAKPVVYVWEGVDRKGAKVTGELTGHSPALIKAQLRKQGVNPLKVRKKSVSIFSAGKKIKPLDIAFFSRQ
MATMMKAGVPLLQSFDIISEGSANPNMRKLVDDIKQEVAAGHSFATALRQKPQYFDDLFCNLVDAGEQAGALESLLDRVA
TYKEKTESLKAKIKKAMTYPIAVVIVAFIVTGILLIKVVPQFQSLFAGFGAELPAFTVMVINLSQYLQDYWFIVLVALFA
MIFAFKRAHKTSEKFRNGLDRTLLKVPVIGPLLYKSAVARFARTLATTFAAGVPLVDALDSVSGATGNIIFKNAVNKVKQ
DVSTGMQLNFSMRSTGVFPTLAVQMTAIGEESGALDSMLDKVATYYEEEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAM
YLPIFKLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=998046 ABDX87_RS17565 WP_346829021.1 3959120..3960355(-) (pilC) [Pseudomonas abietaniphila strain BHJ04]
ATGGCAACCAAAGCAGTGAAGACCCCAAAGGTGGCCAAACCTGTCGTATATGTGTGGGAAGGGGTGGACAGAAAAGGCGC
AAAAGTTACTGGCGAGCTTACAGGTCACAGCCCTGCGCTGATCAAGGCGCAGCTGCGAAAGCAAGGCGTTAATCCGCTAA
AAGTTCGTAAGAAGTCGGTTTCGATCTTTAGCGCGGGCAAGAAAATCAAACCGCTGGACATCGCATTTTTCTCACGCCAG
ATGGCAACCATGATGAAGGCTGGGGTGCCACTGCTGCAGTCTTTCGACATCATCAGTGAGGGCTCTGCCAACCCTAACAT
GCGCAAGCTGGTGGACGACATCAAGCAGGAGGTTGCTGCAGGTCATAGCTTTGCGACCGCCTTGCGACAAAAGCCCCAAT
ACTTCGACGATTTATTTTGCAATCTTGTGGACGCAGGTGAACAGGCCGGTGCCCTGGAGTCGCTTCTGGACCGTGTGGCA
ACGTATAAGGAAAAAACTGAATCGCTGAAGGCGAAAATCAAAAAAGCGATGACCTATCCCATTGCAGTAGTCATCGTCGC
GTTTATCGTGACGGGCATTTTGCTCATCAAGGTCGTGCCGCAGTTTCAATCGTTGTTTGCGGGCTTTGGAGCCGAATTGC
CTGCCTTCACGGTAATGGTTATCAACTTGTCCCAATACCTTCAGGACTATTGGTTTATCGTCCTCGTGGCACTGTTCGCT
ATGATCTTTGCATTCAAGCGCGCCCATAAAACGTCAGAAAAATTTAGAAACGGCCTTGACCGGACGCTGCTCAAGGTTCC
TGTTATCGGCCCGCTGCTGTACAAATCCGCGGTCGCACGGTTTGCCCGGACGTTGGCAACGACGTTCGCGGCAGGCGTCC
CTTTGGTTGATGCGCTCGACTCTGTGTCAGGCGCGACGGGCAATATCATCTTCAAGAATGCCGTCAATAAGGTAAAGCAG
GACGTATCGACAGGCATGCAGTTGAATTTTTCCATGCGAAGCACTGGCGTCTTTCCCACCTTGGCTGTCCAAATGACTGC
TATCGGAGAAGAATCCGGCGCTTTGGACTCCATGCTCGATAAAGTCGCAACCTATTACGAGGAAGAAGTCGACAATATGG
TCGACAGCCTCACCAGCCTCATGGAACCCATGATCATGGCCGTCTTGGGCGTCATCGTCGGCGGCCTTGTCATCGCCATG
TACCTCCCCATCTTCAAACTCGGCAGCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.156

100

0.762
  pilC Acinetobacter baumannii D1279779

62.469

96.594

0.603
  pilC Acinetobacter baylyi ADP1

60.804

96.837

0.589
  pilC Legionella pneumophila strain ERS1305867

54.271

96.837

0.526
  pilC Vibrio cholerae strain A1552

42.929

96.35

0.414
  pilG Neisseria gonorrhoeae MS11

42.929

96.35

0.414
  pilG Neisseria meningitidis 44/76-A

42.929

96.35

0.414
  pilC Vibrio campbellii strain DS40M4

41.919

96.35

0.404
  pilC Thermus thermophilus HB27

39.152

97.567

0.382

Multiple sequence alignment