Detailed information NTG0998045

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABDX87_RS17560
• Genome accession: NZ_CP155619
• Coordinates: 3958245..3959117 (-)
• Length: 290 a.a.
• NCBI ID: WP_346829020.1
• Uniprot ID: -
• Organism: Pseudomonas abietaniphila strain BHJ04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3953245..3964117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDX87_RS17530 (ABDX87_17530)	-	3954182..3954643 (+)	462	WP_346829015.1	hypothetical protein	-
ABDX87_RS17535 (ABDX87_17535)	-	3954650..3955549 (-)	900	WP_346829016.1	LysR substrate-binding domain-containing protein	-
ABDX87_RS17540 (ABDX87_17540)	-	3955719..3956363 (+)	645	WP_346829017.1	hydrolase	-
ABDX87_RS17545 (ABDX87_17545)	-	3956499..3957185 (+)	687	WP_346829018.1	energy-coupling factor ABC transporter permease	-
ABDX87_RS17550 (ABDX87_17550)	yacG	3957413..3957616 (-)	204	WP_062378727.1	DNA gyrase inhibitor YacG	-
ABDX87_RS17555 (ABDX87_17555)	coaE	3957616..3958248 (-)	633	WP_346829019.1	dephospho-CoA kinase	-
ABDX87_RS17560 (ABDX87_17560)	pilD	3958245..3959117 (-)	873	WP_346829020.1	A24 family peptidase	Machinery gene
ABDX87_RS17565 (ABDX87_17565)	pilC	3959120..3960355 (-)	1236	WP_346829021.1	type II secretion system F family protein	Machinery gene
ABDX87_RS17570 (ABDX87_17570)	pilB	3960357..3962051 (-)	1695	WP_346829022.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABDX87_RS17575 (ABDX87_17575)	-	3962124..3962684 (+)	561	WP_346829023.1	pilin	-
ABDX87_RS17585 (ABDX87_17585)	nadC	3962988..3963836 (-)	849	WP_346829024.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31971.30 Da
• Isoelectric Point: 8.1580

>NTDB_id=998045 ABDX87_RS17560 WP_346829020.1 3958245..3959117(-) (pilD) [Pseudomonas abietaniphila strain BHJ04]
MSLLDLLASSPLAFILCTLVLGLLVGSFLNVVVYRLPKMMLRDWKAQAREVLELPAEPQAETFNLILPHSRCPHCSHKIR
AWENLPVVSYVFLGGKCSRCKAPISKRYPLVELACGLLSAFVAWHFGFGWPAGAVLVLSWGLLSMSLIDADHQLLPDAIV
LPLLWLGLIVNAFGLFTSLTDALWGAVFGYLVLWCVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSIVG
AVLGLILLRLRNVETSTPIPFGPYLAIAGWIALLWGDQITTSYMQIAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=998045 ABDX87_RS17560 WP_346829020.1 3958245..3959117(-) (pilD) [Pseudomonas abietaniphila strain BHJ04]
ATGTCCCTCCTCGACCTCCTGGCCAGCTCTCCGCTGGCCTTCATTCTATGCACCCTCGTTTTAGGCCTGCTCGTCGGCAG
CTTCCTCAACGTCGTCGTTTACCGCCTGCCGAAAATGATGCTGCGCGACTGGAAAGCTCAGGCGCGGGAAGTGCTTGAAT
TGCCTGCCGAGCCGCAAGCGGAAACCTTCAACCTGATCCTCCCGCATTCGCGTTGCCCGCACTGTTCCCACAAGATCCGT
GCGTGGGAGAATCTGCCGGTGGTGAGTTATGTGTTCCTTGGCGGTAAGTGTTCGCGTTGCAAGGCGCCGATCAGCAAGCG
TTATCCGTTGGTGGAGCTGGCTTGTGGGTTGCTGTCGGCGTTTGTGGCGTGGCATTTCGGGTTTGGCTGGCCAGCGGGCG
CGGTGTTGGTGTTGAGTTGGGGTTTGCTGTCGATGAGCCTGATCGACGCCGATCACCAGTTGTTGCCCGATGCGATCGTG
TTGCCGCTGTTGTGGCTGGGGTTGATCGTCAATGCCTTCGGGCTGTTCACGTCGCTGACCGATGCATTGTGGGGCGCGGT
GTTCGGGTATCTGGTGTTGTGGTGTGTGTTCTGGCTGTTCAAGTTGATCACCGGCAAAGAAGGCATGGGCTACGGCGATT
TCAAGTTGCTGGCGATGCTCGGCGCTTGGGGTGGCTGGCAGATTTTGCCGCTGACGATTCTTTTGTCGTCGATTGTCGGG
GCGGTGTTGGGCCTGATTTTGCTGCGTCTGCGTAACGTCGAAACCAGCACGCCGATCCCCTTCGGCCCTTATCTGGCCAT
CGCGGGGTGGATCGCACTGCTCTGGGGTGATCAAATAACGACTTCGTATATGCAGATCGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	97.586	0.514
pilD	Vibrio campbellii strain DS40M4	50.355	97.241	0.49
pilD	Acinetobacter baumannii D1279779	51.095	94.483	0.483
pilD	Acinetobacter nosocomialis M2	50.365	94.483	0.476
pilD	Neisseria gonorrhoeae MS11	49.275	95.172	0.469