Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ELZ63_RS01835 Genome accession   NZ_LR134171
Coordinates   361326..363518 (+) Length   730 a.a.
NCBI ID   WP_061724200.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356326..368518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS01810 (NCTC12699_00361) napA 356541..359024 (-) 2484 WP_065245008.1 nitrate reductase catalytic subunit NapA -
  ELZ63_RS01815 (NCTC12699_00362) - 359061..359342 (-) 282 WP_005654036.1 chaperone NapD -
  ELZ63_RS01820 (NCTC12699_00363) napF 359335..359865 (-) 531 WP_005659948.1 ferredoxin-type protein NapF -
  ELZ63_RS01825 (NCTC12699_00364) - 360072..360416 (-) 345 WP_005632159.1 YggL family protein -
  ELZ63_RS01830 (NCTC12699_00365) trmB 360501..361241 (-) 741 WP_005662679.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ELZ63_RS01835 (NCTC12699_00366) priA 361326..363518 (+) 2193 WP_061724200.1 primosomal protein N' Machinery gene
  ELZ63_RS01840 (NCTC12699_00367) - 363559..364605 (-) 1047 WP_005662682.1 AI-2E family transporter -
  ELZ63_RS01845 (NCTC12699_00368) glnB 364605..364943 (-) 339 WP_005654045.1 nitrogen regulatory protein P-II -
  ELZ63_RS01850 (NCTC12699_00369) mog 364945..365538 (-) 594 WP_005635167.1 molybdopterin adenylyltransferase -
  ELZ63_RS01855 (NCTC12699_00370) - 365621..365977 (-) 357 WP_005632174.1 diacylglycerol kinase -
  ELZ63_RS01860 (NCTC12699_00371) relA 365992..368223 (-) 2232 WP_065245007.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82317.55 Da        Isoelectric Point: 9.3186

>NTDB_id=998047 ELZ63_RS01835 WP_061724200.1 361326..363518(+) (priA) [Haemophilus influenzae strain NCTC12699]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALKQGELKRSKKQAEALQYLSETDLEKGNNNFSSA
IWSALKAKGFIEEITIHTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNIAVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKMLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTALLANGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=998047 ELZ63_RS01835 WP_061724200.1 361326..363518(+) (priA) [Haemophilus influenzae strain NCTC12699]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGTTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACCCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTAAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATACTTATCTGAAACTGATCTTGAAAAAGGCAATAATAATTTTTCCTCTGCC
ATTTGGTCTGCCTTAAAAGCCAAAGGGTTTATTGAAGAAATTACTATCCACACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATAGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAATATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTCAA
AGCACGTTTCAACGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCTATTGTGATTGGTACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACACGATTCGTCTTACAAACAACAAGACAGTTGGCGTTACCATGCGCGAGACTTGGCGATTGTGCTGGCTCA
AAAACTAAATATTGCGGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGTAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGGAATTCTACCGCACTTCGTCATTTCGTTATTGATTTAAAAAATCAAAACATA
CAAAACGGACTTTCAAAACCCTTATTGGAACGGATGAAAGCTCACCTAGAAAAAGGCAATCAAGTGTTGCTTTTCTTAAA
TCGTCGTGGCTTTGCCCCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCGCAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACAGAACAATTAGAAGAAACCTTGAAAATGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACTGCGCGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTCGCGAAAGGACATCATTTCCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTTGTGCTACAAACACATTATCCAGATCATCCTTTGCTTACCGCTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCATCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTAGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

DEAD/DEAH box helicase (DEAD)

(204-366)

Helicase conserved C-terminal domain (Helicase_C)

(505-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.489

100

0.453

Multiple sequence alignment