Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABER85_RS13200 Genome accession   NZ_CP155547
Coordinates   2728638..2729864 (-) Length   408 a.a.
NCBI ID   WP_346534725.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2723638..2734864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS13170 (ABER85_13170) - 2723669..2724979 (+) 1311 WP_346534722.1 tetratricopeptide repeat protein -
  ABER85_RS13175 (ABER85_13175) - 2725056..2725382 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABER85_RS13180 (ABER85_13180) rlmB 2725484..2726233 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABER85_RS13185 (ABER85_13185) - 2726269..2727183 (+) 915 WP_000075014.1 DMT family transporter -
  ABER85_RS13190 (ABER85_13190) coaE 2727180..2727776 (-) 597 WP_032035448.1 dephospho-CoA kinase -
  ABER85_RS13195 (ABER85_13195) pilD 2727778..2728638 (-) 861 WP_031966875.1 A24 family peptidase Machinery gene
  ABER85_RS13200 (ABER85_13200) pilC 2728638..2729864 (-) 1227 WP_346534725.1 type II secretion system F family protein Machinery gene
  ABER85_RS13205 (ABER85_13205) pilB 2729894..2731606 (-) 1713 WP_002058663.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABER85_RS13210 (ABER85_13210) tpiA 2731897..2732691 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ABER85_RS13215 (ABER85_13215) secG 2732704..2733033 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABER85_RS13235 (ABER85_13235) rimP 2733674..2734198 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44945.44 Da        Isoelectric Point: 9.8883

>NTDB_id=997668 ABER85_RS13200 WP_346534725.1 2728638..2729864(-) (pilC) [Acinetobacter sp. 8_A20231192]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKHKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIV
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=997668 ABER85_RS13200 WP_346534725.1 2728638..2729864(-) (pilC) [Acinetobacter sp. 8_A20231192]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
ATAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGCACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATATTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGTT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTAATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

47.487

97.549

0.463
  pilG Neisseria meningitidis 44/76-A

47.487

97.549

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment