Detailed information NTG0997667

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABER85_RS13195
• Genome accession: NZ_CP155547
• Coordinates: 2727778..2728638 (-)
• Length: 286 a.a.
• NCBI ID: WP_031966875.1
• Uniprot ID: A0A505MH08
• Organism: Acinetobacter sp. 8_A20231192
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2722778..2733638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABER85_RS13170 (ABER85_13170)	-	2723669..2724979 (+)	1311	WP_346534722.1	tetratricopeptide repeat protein	-
ABER85_RS13175 (ABER85_13175)	-	2725056..2725382 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABER85_RS13180 (ABER85_13180)	rlmB	2725484..2726233 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABER85_RS13185 (ABER85_13185)	-	2726269..2727183 (+)	915	WP_000075014.1	DMT family transporter	-
ABER85_RS13190 (ABER85_13190)	coaE	2727180..2727776 (-)	597	WP_032035448.1	dephospho-CoA kinase	-
ABER85_RS13195 (ABER85_13195)	pilD	2727778..2728638 (-)	861	WP_031966875.1	A24 family peptidase	Machinery gene
ABER85_RS13200 (ABER85_13200)	pilC	2728638..2729864 (-)	1227	WP_346534725.1	type II secretion system F family protein	Machinery gene
ABER85_RS13205 (ABER85_13205)	pilB	2729894..2731606 (-)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABER85_RS13210 (ABER85_13210)	tpiA	2731897..2732691 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
ABER85_RS13215 (ABER85_13215)	secG	2732704..2733033 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32060.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=997667 ABER85_RS13195 WP_031966875.1 2727778..2728638(-) (pilD) [Acinetobacter sp. 8_A20231192]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=997667 ABER85_RS13195 WP_031966875.1 2727778..2728638(-) (pilD) [Acinetobacter sp. 8_A20231192]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A505MH08

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437