Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABC810_RS01655 Genome accession   NZ_CP155532
Coordinates   320879..322135 (+) Length   418 a.a.
NCBI ID   WP_000642705.1    Uniprot ID   A0A0T7I3F9
Organism   Streptococcus pneumoniae strain SP264     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315879..327135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS01615 (ABC810_01615) pneA2 315983..316171 (-) 189 WP_000786759.1 two-peptide bacteriocin subunit PneA2 -
  ABC810_RS01620 (ABC810_01620) pneA1 316178..316402 (-) 225 WP_000181087.1 two-peptide bacteriocin subunit PneA1 -
  ABC810_RS01625 (ABC810_01625) - 316505..316675 (-) 171 WP_001227862.1 PhrA family quorum-sensing system peptide -
  ABC810_RS01630 (ABC810_01630) - 316867..317730 (+) 864 WP_001093641.1 helix-turn-helix transcriptional regulator -
  ABC810_RS01635 (ABC810_01635) comM 318113..318733 (+) 621 WP_000839908.1 hypothetical protein Regulator
  ABC810_RS01640 (ABC810_01640) tsaE 318819..319262 (+) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABC810_RS01645 (ABC810_01645) - 319252..319770 (+) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  ABC810_RS01650 (ABC810_01650) - 319778..320794 (+) 1017 WP_000239284.1 LCP family protein -
  ABC810_RS01655 (ABC810_01655) cinA 320879..322135 (+) 1257 WP_000642705.1 competence/damage-inducible protein A Machinery gene
  ABC810_RS01660 (ABC810_01660) recA 322190..323356 (+) 1167 WP_001085462.1 recombinase RecA Machinery gene
  ABC810_RS01665 (ABC810_01665) - 323663..325033 (+) 1371 WP_001036278.1 MATE family efflux transporter -
  ABC810_RS01670 (ABC810_01670) lytA 325409..326365 (+) 957 WP_000405240.1 N-acetylmuramoyl-L-alanine amidase LytA -
  ABC810_RS01675 (ABC810_01675) - 326724..326885 (+) 162 WP_000289348.1 helix-turn-helix transcriptional regulator -
  ABC810_RS01680 (ABC810_01680) - 326872..327078 (+) 207 WP_000366093.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45047.43 Da        Isoelectric Point: 4.6064

>NTDB_id=997092 ABC810_RS01655 WP_000642705.1 320879..322135(+) (cinA) [Streptococcus pneumoniae strain SP264]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKALVFDPQAQEKLDIFFALRPDYARTPNNERQAQIVEGAIPLPNETGLAVGGKLEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQIDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQI
LDCQTFEGISLRDFCYGYGEETSLASIVVEELKRQGKTIAAAESLTAGLFQATVANFSGASSIFKGGFVTYSLEEKSRML
DIPAKNLEEHGVVSEFTAQKMAEQARSKTQSDFGISLTGVAGPDSLEGHPVGTVFIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=997092 ABC810_RS01655 WP_000642705.1 320879..322135(+) (cinA) [Streptococcus pneumoniae strain SP264]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAACACCAATGCCCAGTTTTTGTCGGA
AAAACTAGCTGAGATTGGGGTAGATGTATATTTTCAGACGGCTGTAGGAGACAATGAAGTTCGTCTCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGCGGTTTGGGGCCAACTGAGGACGACCTAACCAAACAAACC
CTAGCTAAATTTTTAGGGAAAGCATTAGTCTTTGATCCTCAGGCTCAGGAGAAGTTGGATATCTTTTTTGCCCTGCGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCTCAAATTGTAGAAGGAGCGATTCCACTGCCAAACGAAACAGGAC
TGGCTGTTGGAGGAAAATTAGAAGTAGACGGAGTGACCTATGTCGTCCTTCCAGGTCCGCCAAGTGAATTGAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGGATTGGCGA
GAGCCAGTTGGTTACGATTTTGGCTGATTTAATTGATAATCAGATCGATCCTACCTTGGCCCCTTATGCCAAGACAGGAG
AAGTCACTCTACGTCTGTCAACAAAGGCTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTGGAAAATCAAATC
TTGGACTGCCAGACTTTCGAAGGAATTTCTTTACGAGACTTTTGCTATGGTTATGGGGAAGAAACTAGTTTAGCCAGCAT
TGTGGTAGAAGAACTGAAAAGGCAAGGGAAAACCATCGCGGCTGCAGAGAGTTTAACGGCAGGTCTTTTCCAAGCTACCG
TGGCGAATTTTTCTGGAGCTTCAAGTATATTTAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAGGATGTTG
GATATTCCTGCCAAGAATTTGGAAGAACATGGTGTGGTGTCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCTGATTTTGGAATTAGTTTGACCGGAGTGGCAGGACCAGATAGCCTAGAAGGACACCCAGTTGGGACAG
TCTTCATAGGCTTGGCGCAAGAGCAAGGAACTGAGGTTATCAAGGTTAATATTGGAGGCAGAAGCCGAGCAGATGTACGT
CATATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7I3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

99.282

100

0.993
  cinA Streptococcus pneumoniae Rx1

99.043

100

0.99
  cinA Streptococcus pneumoniae R6

99.043

100

0.99
  cinA Streptococcus pneumoniae D39

98.804

100

0.988
  cinA Streptococcus mitis SK321

94.258

100

0.943
  cinA Streptococcus mitis NCTC 12261

94.019

100

0.94
  cinA Streptococcus mutans UA159

71.292

100

0.713
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

45.694

100

0.457

Multiple sequence alignment