Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ14_RS17640 Genome accession   NZ_CP155467
Coordinates   3687058..3687414 (-) Length   118 a.a.
NCBI ID   WP_041846678.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3682058..3692414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ14_RS17625 (NSQ14_17625) - 3682071..3685043 (+) 2973 WP_346206684.1 DEAD/DEAH box helicase -
  NSQ14_RS17630 (NSQ14_17630) - 3685368..3685811 (-) 444 Protein_3421 Rpn family recombination-promoting nuclease/putative transposase -
  NSQ14_RS17635 (NSQ14_17635) - 3686476..3686640 (-) 165 WP_156103279.1 hypothetical protein -
  NSQ14_RS17640 (NSQ14_17640) ssbB 3687058..3687414 (-) 357 WP_041846678.1 single-stranded DNA-binding protein Machinery gene
  NSQ14_RS17645 (NSQ14_17645) - 3687714..3688148 (+) 435 WP_041902741.1 YwpF family protein -
  NSQ14_RS17650 (NSQ14_17650) - 3688195..3688554 (-) 360 WP_041846680.1 hypothetical protein -
  NSQ14_RS17655 (NSQ14_17655) fabZ 3688795..3689217 (-) 423 WP_034773167.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSQ14_RS17660 (NSQ14_17660) - 3689275..3689580 (-) 306 WP_227139861.1 DNA-directed RNA polymerase subunit beta -
  NSQ14_RS17665 (NSQ14_17665) - 3689829..3690680 (-) 852 WP_346216656.1 flagellar hook-basal body protein -
  NSQ14_RS17670 (NSQ14_17670) - 3690811..3691635 (-) 825 WP_346216657.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13120.83 Da        Isoelectric Point: 8.4828

>NTDB_id=996647 NSQ14_RS17640 WP_041846678.1 3687058..3687414(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0862]
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA

Nucleotide


Download         Length: 357 bp        

>NTDB_id=996647 NSQ14_RS17640 WP_041846678.1 3687058..3687414(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0862]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTACGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

92.373

0.576
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.282

87.288

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

89.831

0.466
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.396

89.831

0.39
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

89.831

0.381
  ssbA Streptococcus mutans UA159

42.453

89.831

0.381
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

89.831

0.373
  ssbB/cilA Streptococcus pneumoniae D39

41.509

89.831

0.373
  ssbB/cilA Streptococcus pneumoniae R6

41.509

89.831

0.373
  ssbB/cilA Streptococcus mitis SK321

41.509

89.831

0.373
  ssbB/cilA Streptococcus mitis NCTC 12261

40.566

89.831

0.364

Multiple sequence alignment