Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | NSS91_RS18640 | Genome accession | NZ_CP155466 |
| Coordinates | 3843947..3844303 (-) | Length | 118 a.a. |
| NCBI ID | WP_041846678.1 | Uniprot ID | - |
| Organism | Caldifermentibacillus hisashii strain FSL W8-0983 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3838947..3849303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSS91_RS18630 (NSS91_18630) | - | 3842218..3842673 (-) | 456 | Protein_3623 | Rpn family recombination-promoting nuclease/putative transposase | - |
| NSS91_RS18635 (NSS91_18635) | - | 3843365..3843529 (-) | 165 | WP_156103279.1 | hypothetical protein | - |
| NSS91_RS18640 (NSS91_18640) | ssbB | 3843947..3844303 (-) | 357 | WP_041846678.1 | single-stranded DNA-binding protein | Machinery gene |
| NSS91_RS18645 (NSS91_18645) | - | 3844603..3845037 (+) | 435 | WP_041902741.1 | YwpF family protein | - |
| NSS91_RS18650 (NSS91_18650) | - | 3845084..3845443 (-) | 360 | WP_041902728.1 | hypothetical protein | - |
| NSS91_RS18655 (NSS91_18655) | fabZ | 3845683..3846105 (-) | 423 | WP_346207866.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| NSS91_RS18660 (NSS91_18660) | - | 3846163..3846468 (-) | 306 | WP_227139861.1 | DNA-directed RNA polymerase subunit beta | - |
| NSS91_RS18665 (NSS91_18665) | - | 3846717..3847568 (-) | 852 | WP_322090831.1 | flagellar hook-basal body protein | - |
| NSS91_RS18670 (NSS91_18670) | - | 3847699..3848523 (-) | 825 | WP_041902725.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 13120.83 Da Isoelectric Point: 8.4828
>NTDB_id=996599 NSS91_RS18640 WP_041846678.1 3843947..3844303(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0983]
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
Nucleotide
Download Length: 357 bp
>NTDB_id=996599 NSS91_RS18640 WP_041846678.1 3843947..3844303(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0983]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTATGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTATGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
92.373 |
0.576 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.282 |
87.288 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.887 |
89.831 |
0.466 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.396 |
89.831 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
89.831 |
0.381 |
| ssbA | Streptococcus mutans UA159 |
42.453 |
89.831 |
0.381 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.566 |
89.831 |
0.364 |