Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | NSQ96_RS17625 | Genome accession | NZ_CP155465 |
| Coordinates | 3605920..3606276 (-) | Length | 118 a.a. |
| NCBI ID | WP_342020805.1 | Uniprot ID | - |
| Organism | Caldifermentibacillus hisashii strain FSL K6-2851 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3600920..3611276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ96_RS17615 (NSQ96_17615) | - | 3601763..3604735 (+) | 2973 | WP_342020804.1 | DEAD/DEAH box helicase | - |
| NSQ96_RS17620 (NSQ96_17620) | - | 3605339..3605503 (-) | 165 | WP_156103279.1 | hypothetical protein | - |
| NSQ96_RS17625 (NSQ96_17625) | ssbB | 3605920..3606276 (-) | 357 | WP_342020805.1 | single-stranded DNA-binding protein | Machinery gene |
| NSQ96_RS17630 (NSQ96_17630) | - | 3606576..3607010 (+) | 435 | WP_346200264.1 | YwpF family protein | - |
| NSQ96_RS17635 (NSQ96_17635) | - | 3607057..3607416 (-) | 360 | WP_041902728.1 | hypothetical protein | - |
| NSQ96_RS17640 (NSQ96_17640) | fabZ | 3607656..3608078 (-) | 423 | WP_346200265.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| NSQ96_RS17645 (NSQ96_17645) | - | 3608136..3608441 (-) | 306 | WP_227139861.1 | DNA-directed RNA polymerase subunit beta | - |
| NSQ96_RS17650 (NSQ96_17650) | - | 3608690..3609541 (-) | 852 | WP_309240457.1 | flagellar hook-basal body protein | - |
| NSQ96_RS17655 (NSQ96_17655) | - | 3609672..3610496 (-) | 825 | WP_034773170.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 13093.81 Da Isoelectric Point: 8.4828
>NTDB_id=996551 NSQ96_RS17625 WP_342020805.1 3605920..3606276(-) (ssbB) [Caldifermentibacillus hisashii strain FSL K6-2851]
MINQVTLVGRLTRDPELKLTQEGVALTSITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
MINQVTLVGRLTRDPELKLTQEGVALTSITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
Nucleotide
Download Length: 357 bp
>NTDB_id=996551 NSQ96_RS17625 WP_342020805.1 3605920..3606276(-) (ssbB) [Caldifermentibacillus hisashii strain FSL K6-2851]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAGTATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTACGAAAATAGTGAAGGGAAAAGGGTTTATGTCACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAGTATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTACGAAAATAGTGAAGGGAAAAGGGTTTATGTCACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
92.373 |
0.576 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.282 |
87.288 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.887 |
89.831 |
0.466 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.396 |
89.831 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
89.831 |
0.381 |
| ssbA | Streptococcus mutans UA159 |
42.453 |
89.831 |
0.381 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.566 |
89.831 |
0.364 |