Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAFU62_RS00725 Genome accession   NZ_CP154891
Coordinates   112259..112645 (+) Length   128 a.a.
NCBI ID   WP_345866098.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107259..117645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS00695 (AAFU62_00695) - 108125..108433 (+) 309 Protein_88 hypothetical protein -
  AAFU62_RS00700 (AAFU62_00700) proC 108516..109286 (-) 771 WP_136018957.1 pyrroline-5-carboxylate reductase -
  AAFU62_RS00705 (AAFU62_00705) pepA 109334..110401 (-) 1068 WP_136018958.1 glutamyl aminopeptidase -
  AAFU62_RS00710 (AAFU62_00710) - 110866..111150 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  AAFU62_RS00715 (AAFU62_00715) - 111147..111464 (+) 318 WP_011285355.1 thioredoxin family protein -
  AAFU62_RS00720 (AAFU62_00720) ytpR 111482..112108 (+) 627 WP_136098021.1 YtpR family tRNA-binding protein -
  AAFU62_RS00725 (AAFU62_00725) ssbA 112259..112645 (+) 387 WP_345866098.1 single-stranded DNA-binding protein Machinery gene
  AAFU62_RS00730 (AAFU62_00730) - 112905..113546 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  AAFU62_RS00735 (AAFU62_00735) dusB 113566..114543 (-) 978 WP_023611504.1 tRNA dihydrouridine synthase DusB -
  AAFU62_RS00740 (AAFU62_00740) hslO 114530..115402 (-) 873 WP_129304387.1 Hsp33 family molecular chaperone HslO -
  AAFU62_RS00745 (AAFU62_00745) rofA 115549..117042 (-) 1494 WP_136098022.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14474.56 Da        Isoelectric Point: 8.0157

>NTDB_id=994629 AAFU62_RS00725 WP_345866098.1 112259..112645(+) (ssbA) [Streptococcus pyogenes strain 318231]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAESYASKGSLMSIDGELRTRKYD
KDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=994629 AAFU62_RS00725 WP_345866098.1 112259..112645(+) (ssbA) [Streptococcus pyogenes strain 318231]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAATCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGCAAGTATGAT
AAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCAGCGCGCTAT
GAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.75
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.727
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.711
  ssbB/cilA Streptococcus pneumoniae Rx1

68.702

100

0.703
  ssbB/cilA Streptococcus pneumoniae D39

68.702

100

0.703
  ssbB/cilA Streptococcus pneumoniae R6

68.702

100

0.703
  ssbB/cilA Streptococcus pneumoniae TIGR4

68.702

100

0.703
  ssbB/cilA Streptococcus mitis SK321

67.939

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.649

89.063

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

88.281

0.422
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

82.813

0.414

Multiple sequence alignment