Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAG895_RS14985 Genome accession   NZ_CP154859
Coordinates   3301060..3302292 (+) Length   410 a.a.
NCBI ID   WP_345792787.1    Uniprot ID   -
Organism   Thauera sp. JM12B12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3296060..3307292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG895_RS14970 (AAG895_14970) ccsA 3297049..3297882 (+) 834 WP_345792784.1 cytochrome c biogenesis protein CcsA -
  AAG895_RS14975 (AAG895_14975) - 3297960..3299240 (+) 1281 WP_345792785.1 HlyC/CorC family transporter -
  AAG895_RS14980 (AAG895_14980) pilB 3299329..3301044 (+) 1716 WP_345792786.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAG895_RS14985 (AAG895_14985) pilC 3301060..3302292 (+) 1233 WP_345792787.1 type II secretion system F family protein Machinery gene
  AAG895_RS14990 (AAG895_14990) pilD 3302293..3303144 (+) 852 WP_345792788.1 A24 family peptidase Machinery gene
  AAG895_RS14995 (AAG895_14995) - 3303276..3303551 (+) 276 WP_345792789.1 zinc ribbon domain-containing protein -
  AAG895_RS15000 (AAG895_15000) - 3303553..3304176 (+) 624 WP_345792790.1 DUF502 domain-containing protein -
  AAG895_RS15005 (AAG895_15005) aspS 3304247..3306046 (+) 1800 WP_345792791.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44258.09 Da        Isoelectric Point: 9.8394

>NTDB_id=994157 AAG895_RS14985 WP_345792787.1 3301060..3302292(+) (pilC) [Thauera sp. JM12B12]
MATASRAVRATGPKEDLYTWEGKDKTGKVVRGEIRAAGEAMVQAMLRRQGVQVSKVRKHKMARGGRISDKDIALFTRQLA
TMMKSGVPLLQAFDIAMKGSGNAALSRLLNDIRTDVETGLNLSQAFAKHPQHFDKLFCNLVAAGEQAGILDSLLDRIATY
KEKILAIKSKIKSALFYPAAVVVVAGLVVSVMMLFVIPEFKSVFASFGADLPAPTMLVIAMSDFFVESWYLVFGALIGAI
VFIAWSYKRSTAMQIALDRTLLRFPVIGPIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNYVYLVATRQIQSEV
STGTSLTIAMQNADVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTVIGGLVVAMYL
PIFKLGAVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=994157 AAG895_RS14985 WP_345792787.1 3301060..3302292(+) (pilC) [Thauera sp. JM12B12]
ATGGCGACAGCAAGCCGGGCGGTGCGCGCCACAGGTCCGAAGGAAGACCTGTACACCTGGGAAGGCAAGGACAAGACGGG
CAAGGTCGTGCGCGGCGAGATCCGCGCCGCCGGCGAGGCCATGGTTCAGGCCATGCTGCGCCGCCAGGGCGTCCAGGTCA
GCAAGGTCAGGAAGCACAAGATGGCCCGCGGCGGGCGCATCAGCGACAAGGACATCGCGCTCTTCACCCGCCAGCTCGCG
ACCATGATGAAGTCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGCCATGAAGGGTTCGGGCAACGCTGCGCTGTCGCG
CCTGCTCAACGACATCCGTACCGACGTCGAGACCGGCCTCAACCTTTCTCAGGCCTTCGCGAAGCACCCGCAGCACTTCG
ACAAGCTGTTCTGCAACCTGGTCGCCGCCGGCGAACAGGCCGGCATCCTCGACAGCCTGCTCGACCGCATCGCGACCTAC
AAGGAAAAGATCCTCGCGATCAAGAGCAAGATCAAGTCTGCGCTCTTCTATCCCGCGGCCGTGGTCGTGGTCGCCGGCCT
GGTGGTCTCGGTGATGATGCTGTTCGTGATCCCCGAGTTCAAGAGCGTTTTCGCCAGCTTCGGCGCCGACCTGCCGGCAC
CCACGATGCTGGTGATCGCGATGTCGGACTTCTTCGTCGAGTCCTGGTACCTGGTGTTCGGCGCCCTGATCGGGGCGATC
GTCTTCATCGCCTGGAGCTACAAGCGCTCCACCGCCATGCAGATCGCGCTCGACCGCACGCTGCTGCGCTTCCCGGTCAT
CGGCCCGATCATCCGCAAGGCCACGGTCGCACGCTGGACACGCACGCTATCGACGATGTTCGCCGCCGGCGTACCGCTGG
TGGAGGCGCTGGACTCGGTCGGCGGCGCCGCGGGCAACTACGTCTATCTGGTGGCCACTCGGCAGATCCAGAGCGAAGTC
AGCACCGGCACCAGCCTCACCATCGCGATGCAGAACGCCGACGTGTTCCCGACCATGGTGGTGCAGATGGTGTCCATCGG
CGAGGAGTCCGGCCAGCTCGACAGCATGCTCAGCAAGGTCGCCGACTTCTTCGAGCAGGAAGTGGATGACGCCGTCGCCG
GCCTGTCGCAGCTGCTGGAGCCGCTGATCATGGTCTTCCTCGGCACCGTCATCGGCGGCCTCGTGGTCGCGATGTATCTG
CCGATCTTCAAGCTTGGCGCGGTCGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.518

97.073

0.52
  pilC Pseudomonas stutzeri DSM 10701

50.877

97.317

0.495
  pilG Neisseria gonorrhoeae MS11

50.126

96.829

0.485
  pilG Neisseria meningitidis 44/76-A

49.874

96.829

0.483
  pilC Acinetobacter baylyi ADP1

48.492

97.073

0.471
  pilC Acinetobacter baumannii D1279779

48.111

96.829

0.466
  pilC Vibrio cholerae strain A1552

42.607

97.317

0.415
  pilC Vibrio campbellii strain DS40M4

40.777

100

0.41
  pilC Thermus thermophilus HB27

38.653

97.805

0.378

Multiple sequence alignment