Detailed information
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | AAG895_RS14980 | Genome accession | NZ_CP154859 |
| Coordinates | 3299329..3301044 (+) | Length | 571 a.a. |
| NCBI ID | WP_345792786.1 | Uniprot ID | - |
| Organism | Thauera sp. JM12B12 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3294329..3306044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG895_RS14960 (AAG895_14960) | - | 3294839..3295615 (-) | 777 | WP_345792782.1 | EI24 domain-containing protein | - |
| AAG895_RS14965 (AAG895_14965) | ffh | 3295629..3296999 (-) | 1371 | WP_345792783.1 | signal recognition particle protein | - |
| AAG895_RS14970 (AAG895_14970) | ccsA | 3297049..3297882 (+) | 834 | WP_345792784.1 | cytochrome c biogenesis protein CcsA | - |
| AAG895_RS14975 (AAG895_14975) | - | 3297960..3299240 (+) | 1281 | WP_345792785.1 | HlyC/CorC family transporter | - |
| AAG895_RS14980 (AAG895_14980) | pilB | 3299329..3301044 (+) | 1716 | WP_345792786.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAG895_RS14985 (AAG895_14985) | pilC | 3301060..3302292 (+) | 1233 | WP_345792787.1 | type II secretion system F family protein | Machinery gene |
| AAG895_RS14990 (AAG895_14990) | pilD | 3302293..3303144 (+) | 852 | WP_345792788.1 | A24 family peptidase | Machinery gene |
| AAG895_RS14995 (AAG895_14995) | - | 3303276..3303551 (+) | 276 | WP_345792789.1 | zinc ribbon domain-containing protein | - |
| AAG895_RS15000 (AAG895_15000) | - | 3303553..3304176 (+) | 624 | WP_345792790.1 | DUF502 domain-containing protein | - |
Sequence
Protein
Download Length: 571 a.a. Molecular weight: 62072.28 Da Isoelectric Point: 5.3133
>NTDB_id=994156 AAG895_RS14980 WP_345792786.1 3299329..3301044(+) (pilB) [Thauera sp. JM12B12]
MAASTKPALSGFARALIQHEHLQEADAAACSAHAGEATNAFMLEVANRGLMSCAAMARFAAETFGYPLLDIAAFDPAMFA
RDAVDRKLLSKHQVAPLLKRQNRITLAVADPSNLRALDEIRFQTGMQLDLVIAEADKLKRTVDALTESAADTLKELTGEA
FDMDMLQQDSPTQQRDEEEANEVDDAPVVKFIQKVLVDAINEGASDIHFEPYEKYYRIRVRTDGILRDIAQPPLVLKDKI
AARIKVISRLDISEKRVPQDGRMKLVLSKNKAIDFRVSTLPTLHGEKIVMRILDPSSAMLGIDALGYDPDQKEALLGAVQ
RPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNISTAEDPAEINLPGINQVNVNEKAGLTFSAALRAFLRQDPDIIMVGE
IRDLETAEIAIKAAQTGHLVLSTLHTNDAPSTLERLKNMGVAPFNIASSVILITAQRLARRLCSCKKPVDIPVEALLEAG
FGAEDLDGSWQPMGPVGCDRCKGSGYKGRVGIYQVMPITEEIAHIIMTGGNSMDIAAQAQRDGVRDLRQSGLRKVKQGVT
SLEEVLATTNE
MAASTKPALSGFARALIQHEHLQEADAAACSAHAGEATNAFMLEVANRGLMSCAAMARFAAETFGYPLLDIAAFDPAMFA
RDAVDRKLLSKHQVAPLLKRQNRITLAVADPSNLRALDEIRFQTGMQLDLVIAEADKLKRTVDALTESAADTLKELTGEA
FDMDMLQQDSPTQQRDEEEANEVDDAPVVKFIQKVLVDAINEGASDIHFEPYEKYYRIRVRTDGILRDIAQPPLVLKDKI
AARIKVISRLDISEKRVPQDGRMKLVLSKNKAIDFRVSTLPTLHGEKIVMRILDPSSAMLGIDALGYDPDQKEALLGAVQ
RPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNISTAEDPAEINLPGINQVNVNEKAGLTFSAALRAFLRQDPDIIMVGE
IRDLETAEIAIKAAQTGHLVLSTLHTNDAPSTLERLKNMGVAPFNIASSVILITAQRLARRLCSCKKPVDIPVEALLEAG
FGAEDLDGSWQPMGPVGCDRCKGSGYKGRVGIYQVMPITEEIAHIIMTGGNSMDIAAQAQRDGVRDLRQSGLRKVKQGVT
SLEEVLATTNE
Nucleotide
Download Length: 1716 bp
>NTDB_id=994156 AAG895_RS14980 WP_345792786.1 3299329..3301044(+) (pilB) [Thauera sp. JM12B12]
ATGGCCGCAAGCACCAAACCGGCCCTGAGCGGTTTCGCCAGGGCGTTGATCCAGCACGAGCATCTGCAGGAAGCAGATGC
CGCGGCGTGCTCCGCTCACGCGGGCGAGGCGACCAACGCCTTCATGCTTGAGGTGGCCAACCGCGGCCTGATGAGTTGCG
CCGCGATGGCGCGCTTCGCCGCCGAGACCTTCGGCTACCCGCTGCTCGACATCGCGGCCTTCGACCCGGCGATGTTCGCG
CGCGATGCGGTAGACCGCAAGCTGCTCTCCAAGCATCAGGTCGCGCCGCTGCTCAAGCGCCAGAACAGGATCACGCTCGC
CGTCGCCGACCCATCCAACCTGCGCGCGCTTGACGAGATCCGCTTCCAGACCGGCATGCAGCTCGACCTCGTGATCGCCG
AGGCGGACAAGCTCAAGCGCACGGTCGACGCCCTGACCGAATCGGCCGCCGACACCCTGAAGGAGCTTACCGGCGAAGCC
TTCGACATGGACATGCTGCAGCAGGACAGCCCGACGCAGCAGCGTGACGAGGAGGAGGCCAACGAGGTCGATGACGCGCC
GGTCGTCAAGTTCATCCAGAAAGTGCTGGTGGACGCGATCAACGAGGGCGCCTCCGACATCCACTTCGAGCCCTACGAGA
AGTACTACCGCATCCGCGTGCGCACCGACGGCATCCTGCGTGACATCGCGCAGCCGCCGCTGGTGCTCAAGGACAAGATC
GCCGCACGCATCAAGGTGATCTCCCGGCTGGACATCTCCGAGAAGCGCGTGCCGCAGGACGGACGCATGAAGCTGGTGCT
GTCCAAGAACAAGGCGATCGATTTCCGCGTGTCGACGCTGCCGACGCTGCATGGCGAGAAGATCGTCATGCGTATCCTCG
ACCCGAGCTCGGCCATGCTCGGCATCGACGCGCTCGGCTACGACCCGGACCAGAAGGAAGCGCTGCTCGGCGCCGTCCAG
CGCCCCTACGGCATGATCCTGGTCACCGGGCCGACCGGCTCGGGCAAGACGGTTTCGCTCTACACCTGCCTCAACATCCT
CAACCAGCCGGGGGTGAACATCTCCACGGCGGAAGATCCGGCCGAAATCAACCTGCCCGGCATCAACCAGGTGAACGTCA
ACGAAAAGGCCGGCCTCACCTTCTCGGCTGCGCTGCGTGCATTCCTGCGCCAGGACCCGGACATCATCATGGTCGGCGAG
ATCCGCGACCTCGAAACTGCGGAGATCGCGATCAAGGCGGCGCAGACCGGCCACCTCGTGCTCTCCACCCTGCATACCAA
CGACGCACCTTCGACGCTCGAGCGCCTCAAGAATATGGGCGTGGCGCCGTTCAATATCGCATCCTCGGTGATTCTTATCA
CGGCCCAGCGCCTTGCCCGCCGGCTATGCTCCTGCAAGAAGCCGGTGGACATCCCGGTCGAGGCGCTGCTGGAAGCCGGA
TTCGGCGCCGAGGACTTGGACGGAAGCTGGCAACCCATGGGTCCGGTCGGCTGTGACCGCTGCAAGGGCAGCGGCTACAA
GGGTCGCGTGGGCATCTATCAGGTGATGCCGATCACCGAGGAGATCGCCCACATCATCATGACCGGAGGCAACTCGATGG
ACATCGCGGCCCAAGCCCAGCGCGACGGCGTGCGCGACCTGCGCCAGTCGGGTCTGCGCAAGGTAAAACAGGGCGTCACC
TCGCTGGAAGAAGTGCTGGCGACGACCAACGAATAA
ATGGCCGCAAGCACCAAACCGGCCCTGAGCGGTTTCGCCAGGGCGTTGATCCAGCACGAGCATCTGCAGGAAGCAGATGC
CGCGGCGTGCTCCGCTCACGCGGGCGAGGCGACCAACGCCTTCATGCTTGAGGTGGCCAACCGCGGCCTGATGAGTTGCG
CCGCGATGGCGCGCTTCGCCGCCGAGACCTTCGGCTACCCGCTGCTCGACATCGCGGCCTTCGACCCGGCGATGTTCGCG
CGCGATGCGGTAGACCGCAAGCTGCTCTCCAAGCATCAGGTCGCGCCGCTGCTCAAGCGCCAGAACAGGATCACGCTCGC
CGTCGCCGACCCATCCAACCTGCGCGCGCTTGACGAGATCCGCTTCCAGACCGGCATGCAGCTCGACCTCGTGATCGCCG
AGGCGGACAAGCTCAAGCGCACGGTCGACGCCCTGACCGAATCGGCCGCCGACACCCTGAAGGAGCTTACCGGCGAAGCC
TTCGACATGGACATGCTGCAGCAGGACAGCCCGACGCAGCAGCGTGACGAGGAGGAGGCCAACGAGGTCGATGACGCGCC
GGTCGTCAAGTTCATCCAGAAAGTGCTGGTGGACGCGATCAACGAGGGCGCCTCCGACATCCACTTCGAGCCCTACGAGA
AGTACTACCGCATCCGCGTGCGCACCGACGGCATCCTGCGTGACATCGCGCAGCCGCCGCTGGTGCTCAAGGACAAGATC
GCCGCACGCATCAAGGTGATCTCCCGGCTGGACATCTCCGAGAAGCGCGTGCCGCAGGACGGACGCATGAAGCTGGTGCT
GTCCAAGAACAAGGCGATCGATTTCCGCGTGTCGACGCTGCCGACGCTGCATGGCGAGAAGATCGTCATGCGTATCCTCG
ACCCGAGCTCGGCCATGCTCGGCATCGACGCGCTCGGCTACGACCCGGACCAGAAGGAAGCGCTGCTCGGCGCCGTCCAG
CGCCCCTACGGCATGATCCTGGTCACCGGGCCGACCGGCTCGGGCAAGACGGTTTCGCTCTACACCTGCCTCAACATCCT
CAACCAGCCGGGGGTGAACATCTCCACGGCGGAAGATCCGGCCGAAATCAACCTGCCCGGCATCAACCAGGTGAACGTCA
ACGAAAAGGCCGGCCTCACCTTCTCGGCTGCGCTGCGTGCATTCCTGCGCCAGGACCCGGACATCATCATGGTCGGCGAG
ATCCGCGACCTCGAAACTGCGGAGATCGCGATCAAGGCGGCGCAGACCGGCCACCTCGTGCTCTCCACCCTGCATACCAA
CGACGCACCTTCGACGCTCGAGCGCCTCAAGAATATGGGCGTGGCGCCGTTCAATATCGCATCCTCGGTGATTCTTATCA
CGGCCCAGCGCCTTGCCCGCCGGCTATGCTCCTGCAAGAAGCCGGTGGACATCCCGGTCGAGGCGCTGCTGGAAGCCGGA
TTCGGCGCCGAGGACTTGGACGGAAGCTGGCAACCCATGGGTCCGGTCGGCTGTGACCGCTGCAAGGGCAGCGGCTACAA
GGGTCGCGTGGGCATCTATCAGGTGATGCCGATCACCGAGGAGATCGCCCACATCATCATGACCGGAGGCAACTCGATGG
ACATCGCGGCCCAAGCCCAGCGCGACGGCGTGCGCGACCTGCGCCAGTCGGGTCTGCGCAAGGTAAAACAGGGCGTCACC
TCGCTGGAAGAAGTGCTGGCGACGACCAACGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
56.696 |
100 |
0.571 |
| pilB | Acinetobacter baylyi ADP1 |
55.769 |
100 |
0.559 |
| pilB | Legionella pneumophila strain ERS1305867 |
53.086 |
99.299 |
0.527 |
| pilF | Neisseria gonorrhoeae MS11 |
52.827 |
99.124 |
0.524 |
| pilB | Vibrio cholerae strain A1552 |
52.157 |
89.317 |
0.466 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
49.617 |
91.419 |
0.454 |
| pilB | Vibrio campbellii strain DS40M4 |
48.952 |
91.944 |
0.45 |
| pilF | Thermus thermophilus HB27 |
41.055 |
92.995 |
0.382 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.755 |
92.82 |
0.378 |