Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilB   Type   Machinery gene
Locus tag   AAG895_RS14980 Genome accession   NZ_CP154859
Coordinates   3299329..3301044 (+) Length   571 a.a.
NCBI ID   WP_345792786.1    Uniprot ID   -
Organism   Thauera sp. JM12B12     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3294329..3306044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG895_RS14960 (AAG895_14960) - 3294839..3295615 (-) 777 WP_345792782.1 EI24 domain-containing protein -
  AAG895_RS14965 (AAG895_14965) ffh 3295629..3296999 (-) 1371 WP_345792783.1 signal recognition particle protein -
  AAG895_RS14970 (AAG895_14970) ccsA 3297049..3297882 (+) 834 WP_345792784.1 cytochrome c biogenesis protein CcsA -
  AAG895_RS14975 (AAG895_14975) - 3297960..3299240 (+) 1281 WP_345792785.1 HlyC/CorC family transporter -
  AAG895_RS14980 (AAG895_14980) pilB 3299329..3301044 (+) 1716 WP_345792786.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAG895_RS14985 (AAG895_14985) pilC 3301060..3302292 (+) 1233 WP_345792787.1 type II secretion system F family protein Machinery gene
  AAG895_RS14990 (AAG895_14990) pilD 3302293..3303144 (+) 852 WP_345792788.1 A24 family peptidase Machinery gene
  AAG895_RS14995 (AAG895_14995) - 3303276..3303551 (+) 276 WP_345792789.1 zinc ribbon domain-containing protein -
  AAG895_RS15000 (AAG895_15000) - 3303553..3304176 (+) 624 WP_345792790.1 DUF502 domain-containing protein -

Sequence


Protein


Download         Length: 571 a.a.        Molecular weight: 62072.28 Da        Isoelectric Point: 5.3133

>NTDB_id=994156 AAG895_RS14980 WP_345792786.1 3299329..3301044(+) (pilB) [Thauera sp. JM12B12]
MAASTKPALSGFARALIQHEHLQEADAAACSAHAGEATNAFMLEVANRGLMSCAAMARFAAETFGYPLLDIAAFDPAMFA
RDAVDRKLLSKHQVAPLLKRQNRITLAVADPSNLRALDEIRFQTGMQLDLVIAEADKLKRTVDALTESAADTLKELTGEA
FDMDMLQQDSPTQQRDEEEANEVDDAPVVKFIQKVLVDAINEGASDIHFEPYEKYYRIRVRTDGILRDIAQPPLVLKDKI
AARIKVISRLDISEKRVPQDGRMKLVLSKNKAIDFRVSTLPTLHGEKIVMRILDPSSAMLGIDALGYDPDQKEALLGAVQ
RPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNISTAEDPAEINLPGINQVNVNEKAGLTFSAALRAFLRQDPDIIMVGE
IRDLETAEIAIKAAQTGHLVLSTLHTNDAPSTLERLKNMGVAPFNIASSVILITAQRLARRLCSCKKPVDIPVEALLEAG
FGAEDLDGSWQPMGPVGCDRCKGSGYKGRVGIYQVMPITEEIAHIIMTGGNSMDIAAQAQRDGVRDLRQSGLRKVKQGVT
SLEEVLATTNE

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=994156 AAG895_RS14980 WP_345792786.1 3299329..3301044(+) (pilB) [Thauera sp. JM12B12]
ATGGCCGCAAGCACCAAACCGGCCCTGAGCGGTTTCGCCAGGGCGTTGATCCAGCACGAGCATCTGCAGGAAGCAGATGC
CGCGGCGTGCTCCGCTCACGCGGGCGAGGCGACCAACGCCTTCATGCTTGAGGTGGCCAACCGCGGCCTGATGAGTTGCG
CCGCGATGGCGCGCTTCGCCGCCGAGACCTTCGGCTACCCGCTGCTCGACATCGCGGCCTTCGACCCGGCGATGTTCGCG
CGCGATGCGGTAGACCGCAAGCTGCTCTCCAAGCATCAGGTCGCGCCGCTGCTCAAGCGCCAGAACAGGATCACGCTCGC
CGTCGCCGACCCATCCAACCTGCGCGCGCTTGACGAGATCCGCTTCCAGACCGGCATGCAGCTCGACCTCGTGATCGCCG
AGGCGGACAAGCTCAAGCGCACGGTCGACGCCCTGACCGAATCGGCCGCCGACACCCTGAAGGAGCTTACCGGCGAAGCC
TTCGACATGGACATGCTGCAGCAGGACAGCCCGACGCAGCAGCGTGACGAGGAGGAGGCCAACGAGGTCGATGACGCGCC
GGTCGTCAAGTTCATCCAGAAAGTGCTGGTGGACGCGATCAACGAGGGCGCCTCCGACATCCACTTCGAGCCCTACGAGA
AGTACTACCGCATCCGCGTGCGCACCGACGGCATCCTGCGTGACATCGCGCAGCCGCCGCTGGTGCTCAAGGACAAGATC
GCCGCACGCATCAAGGTGATCTCCCGGCTGGACATCTCCGAGAAGCGCGTGCCGCAGGACGGACGCATGAAGCTGGTGCT
GTCCAAGAACAAGGCGATCGATTTCCGCGTGTCGACGCTGCCGACGCTGCATGGCGAGAAGATCGTCATGCGTATCCTCG
ACCCGAGCTCGGCCATGCTCGGCATCGACGCGCTCGGCTACGACCCGGACCAGAAGGAAGCGCTGCTCGGCGCCGTCCAG
CGCCCCTACGGCATGATCCTGGTCACCGGGCCGACCGGCTCGGGCAAGACGGTTTCGCTCTACACCTGCCTCAACATCCT
CAACCAGCCGGGGGTGAACATCTCCACGGCGGAAGATCCGGCCGAAATCAACCTGCCCGGCATCAACCAGGTGAACGTCA
ACGAAAAGGCCGGCCTCACCTTCTCGGCTGCGCTGCGTGCATTCCTGCGCCAGGACCCGGACATCATCATGGTCGGCGAG
ATCCGCGACCTCGAAACTGCGGAGATCGCGATCAAGGCGGCGCAGACCGGCCACCTCGTGCTCTCCACCCTGCATACCAA
CGACGCACCTTCGACGCTCGAGCGCCTCAAGAATATGGGCGTGGCGCCGTTCAATATCGCATCCTCGGTGATTCTTATCA
CGGCCCAGCGCCTTGCCCGCCGGCTATGCTCCTGCAAGAAGCCGGTGGACATCCCGGTCGAGGCGCTGCTGGAAGCCGGA
TTCGGCGCCGAGGACTTGGACGGAAGCTGGCAACCCATGGGTCCGGTCGGCTGTGACCGCTGCAAGGGCAGCGGCTACAA
GGGTCGCGTGGGCATCTATCAGGTGATGCCGATCACCGAGGAGATCGCCCACATCATCATGACCGGAGGCAACTCGATGG
ACATCGCGGCCCAAGCCCAGCGCGACGGCGTGCGCGACCTGCGCCAGTCGGGTCTGCGCAAGGTAAAACAGGGCGTCACC
TCGCTGGAAGAAGTGCTGGCGACGACCAACGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.696

100

0.571

  pilB Acinetobacter baylyi ADP1

55.769

100

0.559

  pilB Legionella pneumophila strain ERS1305867

53.086

99.299

0.527

  pilF Neisseria gonorrhoeae MS11

52.827

99.124

0.524

  pilB Vibrio cholerae strain A1552

52.157

89.317

0.466

  pilB Vibrio parahaemolyticus RIMD 2210633

49.617

91.419

0.454

  pilB Vibrio campbellii strain DS40M4

48.952

91.944

0.45

  pilF Thermus thermophilus HB27

41.055

92.995

0.382

  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.755

92.82

0.378


Multiple sequence alignment