Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAH980_RS13750 Genome accession   NZ_CP154856
Coordinates   2916248..2917474 (-) Length   408 a.a.
NCBI ID   WP_004710832.1    Uniprot ID   K9B765
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911248..2922474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS13720 (AAH980_13720) - 2911279..2912589 (+) 1311 WP_284080462.1 tetratricopeptide repeat protein -
  AAH980_RS13725 (AAH980_13725) - 2912666..2912992 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  AAH980_RS13730 (AAH980_13730) rlmB 2913094..2913843 (+) 750 WP_002156969.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AAH980_RS13735 (AAH980_13735) - 2913879..2914793 (+) 915 WP_284080461.1 DMT family transporter -
  AAH980_RS13740 (AAH980_13740) coaE 2914790..2915386 (-) 597 WP_004883551.1 dephospho-CoA kinase -
  AAH980_RS13745 (AAH980_13745) pilD 2915388..2916248 (-) 861 WP_004710834.1 A24 family peptidase Machinery gene
  AAH980_RS13750 (AAH980_13750) pilC 2916248..2917474 (-) 1227 WP_004710832.1 type II secretion system F family protein Machinery gene
  AAH980_RS13755 (AAH980_13755) pilB 2917502..2919214 (-) 1713 WP_004710829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAH980_RS13760 (AAH980_13760) tpiA 2919505..2920299 (+) 795 WP_004710827.1 triose-phosphate isomerase -
  AAH980_RS13765 (AAH980_13765) secG 2920312..2920641 (+) 330 WP_002156913.1 preprotein translocase subunit SecG -
  AAH980_RS13785 (AAH980_13785) rimP 2921278..2921802 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45015.53 Da        Isoelectric Point: 9.8883

>NTDB_id=994099 AAH980_RS13750 WP_004710832.1 2916248..2917474(-) (pilC) [Acinetobacter nosocomialis strain Ab25]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=994099 AAH980_RS13750 WP_004710832.1 2916248..2917474(-) (pilC) [Acinetobacter nosocomialis strain Ab25]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGGTTATTTAAGAAAAAAGTAACTACACTCGATATTACGATTTTTACCCGACAACTTGCGACT
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAATCAGGTGCACTCGAAACGATGTTGGATCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATTAAGAAAGCAATGAAATACCCTGCAACAGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTCCCCGTTTTCCAAGATTTATTTGCTTCTTTCGGCGCAGAATTACCAGCATTTA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACCGGTCAACAACTTCAATTTGCTATGCGAGTATCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9B765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

98.039

100

0.98
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment