Detailed information NTG0994098

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH980_RS13745
• Genome accession: NZ_CP154856
• Coordinates: 2915388..2916248 (-)
• Length: 286 a.a.
• NCBI ID: WP_004710834.1
• Uniprot ID: A0AB36M6L9
• Organism: Acinetobacter nosocomialis strain Ab25
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2910388..2921248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH980_RS13720 (AAH980_13720)	-	2911279..2912589 (+)	1311	WP_284080462.1	tetratricopeptide repeat protein	-
AAH980_RS13725 (AAH980_13725)	-	2912666..2912992 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AAH980_RS13730 (AAH980_13730)	rlmB	2913094..2913843 (+)	750	WP_002156969.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AAH980_RS13735 (AAH980_13735)	-	2913879..2914793 (+)	915	WP_284080461.1	DMT family transporter	-
AAH980_RS13740 (AAH980_13740)	coaE	2914790..2915386 (-)	597	WP_004883551.1	dephospho-CoA kinase	-
AAH980_RS13745 (AAH980_13745)	pilD	2915388..2916248 (-)	861	WP_004710834.1	A24 family peptidase	Machinery gene
AAH980_RS13750 (AAH980_13750)	pilC	2916248..2917474 (-)	1227	WP_004710832.1	type II secretion system F family protein	Machinery gene
AAH980_RS13755 (AAH980_13755)	pilB	2917502..2919214 (-)	1713	WP_004710829.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAH980_RS13760 (AAH980_13760)	tpiA	2919505..2920299 (+)	795	WP_004710827.1	triose-phosphate isomerase	-
AAH980_RS13765 (AAH980_13765)	secG	2920312..2920641 (+)	330	WP_002156913.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32121.54 Da
• Isoelectric Point: 7.1784

>NTDB_id=994098 AAH980_RS13745 WP_004710834.1 2915388..2916248(-) (pilD) [Acinetobacter nosocomialis strain Ab25]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=994098 AAH980_RS13745 WP_004710834.1 2915388..2916248(-) (pilD) [Acinetobacter nosocomialis strain Ab25]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCC
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAACTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGATATTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCGTTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	99.65	100	0.997
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441