Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   AAIS09_RS09085 Genome accession   NZ_CP154595
Coordinates   1793843..1794880 (-) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain serotype 4     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1788843..1799880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIS09_RS09060 (AAIS09_09045) - 1789644..1790975 (-) 1332 WP_000390049.1 hemolysin family protein -
  AAIS09_RS09065 (AAIS09_09050) endA 1791204..1792028 (-) 825 WP_050204516.1 DNA-entry nuclease EndA Machinery gene
  AAIS09_RS09070 (AAIS09_09055) - 1792067..1792255 (-) 189 WP_001818955.1 DNA-directed RNA polymerase subunit beta -
  AAIS09_RS09075 (AAIS09_09060) murA 1792248..1793531 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AAIS09_RS09080 (AAIS09_09065) - 1793555..1793785 (-) 231 WP_000250393.1 DUF1146 family protein -
  AAIS09_RS09085 (AAIS09_09070) sepM 1793843..1794880 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  AAIS09_RS09090 (AAIS09_09075) coaD 1794864..1795352 (-) 489 WP_001280740.1 pantetheine-phosphate adenylyltransferase -
  AAIS09_RS09095 (AAIS09_09080) rsmD 1795342..1795881 (-) 540 WP_369916964.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAIS09_RS09100 (AAIS09_09085) asnA 1795946..1796938 (-) 993 WP_000747995.1 aspartate--ammonia ligase -
  AAIS09_RS09105 (AAIS09_09090) - 1797050..1797733 (-) 684 WP_001016916.1 Bax inhibitor-1/YccA family protein -
  AAIS09_RS09110 (AAIS09_09095) - 1797789..1798529 (-) 741 WP_000152702.1 TrmH family RNA methyltransferase -
  AAIS09_RS09115 (AAIS09_09100) - 1798563..1798841 (+) 279 WP_050137384.1 acylphosphatase -
  AAIS09_RS09120 (AAIS09_09105) yidC 1798919..1799845 (+) 927 WP_000835955.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=993708 AAIS09_RS09085 WP_000727277.1 1793843..1794880(-) (sepM) [Streptococcus pneumoniae strain serotype 4]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=993708 AAIS09_RS09085 WP_000727277.1 1793843..1794880(-) (sepM) [Streptococcus pneumoniae strain serotype 4]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment