Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMG46_RS09555 Genome accession   NZ_AP027042
Coordinates   2166831..2168099 (-) Length   422 a.a.
NCBI ID   WP_281852280.1    Uniprot ID   -
Organism   Dyella sp. GSA-30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2161831..2173099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG46_RS09525 (DYGSA30_18910) lgt 2161844..2162728 (+) 885 WP_281852274.1 prolipoprotein diacylglyceryl transferase -
  QMG46_RS09530 (DYGSA30_18920) - 2162733..2163527 (+) 795 WP_281852275.1 thymidylate synthase -
  QMG46_RS09535 (DYGSA30_18930) - 2163650..2164138 (+) 489 WP_281852276.1 dihydrofolate reductase -
  QMG46_RS09540 (DYGSA30_18940) - 2164156..2165091 (+) 936 WP_281852277.1 Nudix family hydrolase -
  QMG46_RS09545 (DYGSA30_18950) coaE 2165286..2165906 (-) 621 WP_281852278.1 dephospho-CoA kinase -
  QMG46_RS09550 (DYGSA30_18960) pilD 2165903..2166760 (-) 858 WP_281852279.1 A24 family peptidase Machinery gene
  QMG46_RS09555 (DYGSA30_18970) pilC 2166831..2168099 (-) 1269 WP_281852280.1 type II secretion system F family protein Machinery gene
  QMG46_RS09560 (DYGSA30_18980) pilB 2168246..2169967 (-) 1722 WP_281852281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMG46_RS09565 (DYGSA30_18990) - 2170171..2171343 (+) 1173 WP_281852282.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  QMG46_RS09570 (DYGSA30_19000) - 2171416..2172270 (+) 855 WP_281852283.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45819.98 Da        Isoelectric Point: 10.0245

>NTDB_id=99250 QMG46_RS09555 WP_281852280.1 2166831..2168099(-) (pilC) [Dyella sp. GSA-30]
MATATATANKARSVGADRATVSALTTYEWVALDKRGKRMKGDMPAKNASLVKAELRRQGMNPQTVRERPKPLFGSSGSTV
KPRDVAIFSRQIATMMASGVPMVQSFDIIADGQKNVRFKNILTDVKQGIEGGQALHEALARHPVQFDELYRNLVHAGESA
GVLDTVLDTVATYKERMEGIKAKIKKAMFYPVMVLAVALLVCVIMLLFVVPVFEQTFRDAGAELPVPTLVVVAASKFMQS
YWWALLIGIVGSIAALIFAKKRSLKFAHFLDRVSLKIPVIGNILRQSAIARFARTLGVTFRAGVPLVEALEAVAGATGSI
VYGEAIMQMRDDIAVGHQLQLSMRQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVNNAVDTLSTLLEPMIMVIL
GGLVGGMVVALYLPIFKLAGTV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=99250 QMG46_RS09555 WP_281852280.1 2166831..2168099(-) (pilC) [Dyella sp. GSA-30]
ATGGCGACGGCTACCGCAACCGCAAACAAGGCACGCTCAGTCGGCGCAGATCGCGCCACCGTGAGCGCGCTGACCACATA
CGAGTGGGTCGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGCGATATGCCCGCCAAGAACGCCTCGCTGGTCAAGGCGG
AGCTGCGGCGTCAGGGTATGAACCCCCAGACGGTGCGCGAACGACCCAAGCCTCTGTTTGGCTCATCGGGCAGCACGGTC
AAGCCGCGCGATGTAGCGATCTTCAGCCGCCAGATCGCCACCATGATGGCCTCGGGCGTGCCGATGGTGCAGTCCTTTGA
CATCATCGCCGATGGTCAGAAGAACGTCCGCTTCAAGAACATTCTCACCGACGTCAAGCAGGGGATCGAGGGTGGCCAGG
CGCTGCATGAGGCACTGGCGCGGCATCCTGTCCAGTTCGACGAGCTTTATCGCAACCTGGTTCATGCCGGCGAATCGGCG
GGTGTGCTGGATACGGTGCTCGATACCGTCGCGACCTATAAAGAGCGCATGGAAGGGATCAAGGCCAAGATCAAAAAGGC
CATGTTCTACCCCGTCATGGTGCTAGCGGTGGCTTTGCTGGTCTGCGTCATCATGCTGCTCTTCGTAGTACCGGTGTTTG
AGCAGACTTTCCGGGATGCTGGTGCTGAGTTGCCCGTGCCAACATTGGTCGTTGTGGCCGCATCCAAGTTCATGCAGTCC
TATTGGTGGGCACTTTTAATCGGCATCGTGGGCAGCATTGCGGCACTGATCTTCGCCAAGAAGCGCTCGCTCAAGTTCGC
CCACTTTCTCGACCGCGTGTCACTCAAGATCCCAGTCATCGGCAACATCCTTCGCCAGTCGGCAATCGCCCGCTTCGCCC
GTACGCTAGGCGTAACGTTCCGCGCAGGTGTCCCATTGGTCGAAGCTCTGGAAGCTGTCGCCGGCGCCACCGGCAGCATC
GTCTACGGTGAGGCCATCATGCAGATGCGCGACGACATTGCCGTCGGTCACCAGCTGCAGCTGTCGATGCGTCAGACCGG
TCTGTTCCCGAACATGGTGGTGCAAATGACCGCTATCGGCGAGGAATCGGGCGCCCTGGACAATATGCTGTTCAAGGTGG
CCGAGTTCTACGAGGAGGAGGTCAACAACGCCGTCGACACCCTGTCCACTCTGCTCGAACCGATGATCATGGTCATCCTC
GGTGGCCTGGTCGGTGGCATGGTGGTTGCGCTGTACCTGCCCATCTTCAAACTCGCCGGCACCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.135

94.55

0.512
  pilC Pseudomonas stutzeri DSM 10701

52.261

94.313

0.493
  pilC Acinetobacter baumannii D1279779

48.75

94.787

0.462
  pilC Acinetobacter baylyi ADP1

47.073

97.156

0.457
  pilG Neisseria gonorrhoeae MS11

41.602

91.706

0.382
  pilG Neisseria meningitidis 44/76-A

41.344

91.706

0.379
  pilC Vibrio cholerae strain A1552

40.506

93.602

0.379
  pilC Vibrio campbellii strain DS40M4

39.348

94.55

0.372
  pilC Thermus thermophilus HB27

37.838

96.445

0.365

Multiple sequence alignment