Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMG46_RS09550 Genome accession   NZ_AP027042
Coordinates   2165903..2166760 (-) Length   285 a.a.
NCBI ID   WP_281852279.1    Uniprot ID   -
Organism   Dyella sp. GSA-30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2160903..2171760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG46_RS09525 (DYGSA30_18910) lgt 2161844..2162728 (+) 885 WP_281852274.1 prolipoprotein diacylglyceryl transferase -
  QMG46_RS09530 (DYGSA30_18920) - 2162733..2163527 (+) 795 WP_281852275.1 thymidylate synthase -
  QMG46_RS09535 (DYGSA30_18930) - 2163650..2164138 (+) 489 WP_281852276.1 dihydrofolate reductase -
  QMG46_RS09540 (DYGSA30_18940) - 2164156..2165091 (+) 936 WP_281852277.1 Nudix family hydrolase -
  QMG46_RS09545 (DYGSA30_18950) coaE 2165286..2165906 (-) 621 WP_281852278.1 dephospho-CoA kinase -
  QMG46_RS09550 (DYGSA30_18960) pilD 2165903..2166760 (-) 858 WP_281852279.1 A24 family peptidase Machinery gene
  QMG46_RS09555 (DYGSA30_18970) pilC 2166831..2168099 (-) 1269 WP_281852280.1 type II secretion system F family protein Machinery gene
  QMG46_RS09560 (DYGSA30_18980) pilB 2168246..2169967 (-) 1722 WP_281852281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMG46_RS09565 (DYGSA30_18990) - 2170171..2171343 (+) 1173 WP_281852282.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31406.72 Da        Isoelectric Point: 8.4698

>NTDB_id=99249 QMG46_RS09550 WP_281852279.1 2165903..2166760(-) (pilD) [Dyella sp. GSA-30]
MPELDLWIWIVIAAVFGLLVGSFLNVVILRLPARIDAMWRNEAREILALPADESPLPPGIVVESSHCPHCKHKLAIRDNI
PLFGWLFLGGRCRYCKAPISIQYPLVELLTGVLSALIVWKLGVSWATLAGLAFTWLLIALSGIDFRTQLLPDSLNYPLLW
LGLLLSLWTMFTTPNLSIIGAVVGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAAMGAWMGPSALLPIILLSSLIGALFGV
VLIATRKLGREVPMPFGPFIAAAGWVWFMAGDTLLQAYLNLSGMR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=99249 QMG46_RS09550 WP_281852279.1 2165903..2166760(-) (pilD) [Dyella sp. GSA-30]
ATGCCCGAGCTCGACCTTTGGATCTGGATCGTCATCGCTGCCGTCTTCGGCTTGCTGGTGGGTAGTTTTCTCAATGTAGT
GATCCTGCGGCTGCCGGCGCGCATCGATGCGATGTGGCGCAATGAGGCACGCGAGATCCTGGCGCTGCCGGCCGACGAAA
GCCCGCTGCCCCCCGGCATCGTGGTGGAGTCGTCGCACTGCCCGCACTGCAAGCACAAGCTGGCGATTCGCGACAATATT
CCGCTGTTCGGCTGGCTGTTCCTGGGCGGGCGCTGCCGTTACTGCAAGGCGCCCATTTCGATCCAGTACCCGCTGGTGGA
GCTGTTGACGGGCGTGCTGAGCGCGCTGATCGTGTGGAAGCTCGGCGTCAGCTGGGCCACCCTGGCCGGGCTCGCCTTTA
CCTGGCTGCTGATCGCCCTCTCCGGCATCGATTTCCGCACCCAGTTGCTACCCGATTCGTTGAACTACCCGCTGCTGTGG
CTGGGCTTGTTGCTCAGCCTGTGGACGATGTTCACTACGCCGAACCTGTCGATCATTGGCGCTGTTGTCGGCTACCTCAG
CCTTTGGAGCGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCTATGGCGACTTCAAGCTGTTGGCCG
CGATGGGCGCCTGGATGGGCCCATCCGCCCTGCTCCCGATCATCCTGCTGTCTTCGCTGATCGGCGCTTTATTCGGCGTG
GTGCTGATCGCGACCCGCAAGCTCGGGCGCGAGGTGCCGATGCCGTTTGGGCCGTTTATCGCAGCGGCCGGGTGGGTCTG
GTTCATGGCGGGCGATACACTGCTGCAGGCCTATTTGAACCTTAGCGGCATGCGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-120)

Type IV leader peptidase family (Peptidase_A24)

(132-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.821

97.895

0.488
  pilD Vibrio campbellii strain DS40M4

50.362

96.842

0.488
  pilD Acinetobacter nosocomialis M2

47.826

96.842

0.463
  pilD Acinetobacter baumannii D1279779

47.464

96.842

0.46
  pilD Neisseria gonorrhoeae MS11

47.566

93.684

0.446

Multiple sequence alignment