Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | AAFQ93_RS03920 | Genome accession | NZ_CP152419 |
| Coordinates | 814042..814437 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282453.1 | Uniprot ID | I2J174 |
| Organism | Streptococcus nidrosiense strain SO-23-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 809042..819437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFQ93_RS03875 (AAFQ93_03865) | - | 809089..809271 (+) | 183 | WP_049504271.1 | hypothetical protein | - |
| AAFQ93_RS03880 (AAFQ93_03870) | - | 809593..809826 (+) | 234 | WP_000368731.1 | DUF1858 domain-containing protein | - |
| AAFQ93_RS03885 (AAFQ93_03875) | - | 809826..811160 (+) | 1335 | WP_375555669.1 | DUF438 domain-containing protein | - |
| AAFQ93_RS03890 (AAFQ93_03880) | - | 811170..811424 (+) | 255 | WP_061862687.1 | DUF1912 family protein | - |
| AAFQ93_RS03895 (AAFQ93_03885) | - | 811462..811767 (-) | 306 | WP_375555670.1 | DUF898 family protein | - |
| AAFQ93_RS03900 (AAFQ93_03890) | - | 811932..812222 (+) | 291 | WP_373094309.1 | DUF4651 domain-containing protein | - |
| AAFQ93_RS03905 (AAFQ93_03895) | - | 812219..812536 (+) | 318 | WP_375555671.1 | thioredoxin family protein | - |
| AAFQ93_RS03910 (AAFQ93_03900) | ytpR | 812550..813176 (+) | 627 | WP_373094313.1 | YtpR family tRNA-binding protein | - |
| AAFQ93_RS03915 (AAFQ93_03905) | - | 813206..813967 (+) | 762 | WP_375555672.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| AAFQ93_RS03920 (AAFQ93_03910) | ssbB/cilA | 814042..814437 (+) | 396 | WP_000282453.1 | single-stranded DNA-binding protein | Machinery gene |
| AAFQ93_RS03925 (AAFQ93_03915) | - | 814628..815611 (+) | 984 | WP_000164670.1 | substrate-binding domain-containing protein | - |
| AAFQ93_RS03930 (AAFQ93_03920) | - | 815611..816927 (+) | 1317 | WP_049527044.1 | sensor histidine kinase | - |
| AAFQ93_RS03935 (AAFQ93_03925) | - | 816934..817617 (+) | 684 | WP_025171300.1 | response regulator transcription factor | - |
| AAFQ93_RS03940 (AAFQ93_03930) | - | 817614..818912 (+) | 1299 | WP_375555673.1 | extracellular solute-binding protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14797.69 Da Isoelectric Point: 5.9381
>NTDB_id=989163 AAFQ93_RS03920 WP_000282453.1 814042..814437(+) (ssbB/cilA) [Streptococcus nidrosiense strain SO-23-1]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFINIVVWGKLAETLASYGSKGSLISVDGELRTR
KFEKNGQTNYVTEVLCTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFINIVVWGKLAETLASYGSKGSLISVDGELRTR
KFEKNGQTNYVTEVLCTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=989163 AAFQ93_RS03920 WP_000282453.1 814042..814437(+) (ssbB/cilA) [Streptococcus nidrosiense strain SO-23-1]
ATGTATAATAAAGTTATTATGATTGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGATAAGTCCGTTGC
ACGAGCAACTATCGCAGTGAACCGTCGTTACAAAGACCAAAACGGAGAACGTGAAGCAGACTTCATCAATATTGTGGTCT
GGGGCAAATTGGCTGAAACCTTGGCTAGTTATGGAAGCAAGGGTAGTCTCATTTCTGTGGATGGGGAACTTCGTACCCGT
AAGTTTGAGAAGAATGGCCAGACCAACTATGTAACAGAAGTTCTCTGTACAGGTTTCCAACTCTTAGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGTCAAGACTTGGCAGATTTGGTCTTGGAAGAAGAGGAACTTCCATTTTAA
ATGTATAATAAAGTTATTATGATTGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGATAAGTCCGTTGC
ACGAGCAACTATCGCAGTGAACCGTCGTTACAAAGACCAAAACGGAGAACGTGAAGCAGACTTCATCAATATTGTGGTCT
GGGGCAAATTGGCTGAAACCTTGGCTAGTTATGGAAGCAAGGGTAGTCTCATTTCTGTGGATGGGGAACTTCGTACCCGT
AAGTTTGAGAAGAATGGCCAGACCAACTATGTAACAGAAGTTCTCTGTACAGGTTTCCAACTCTTAGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGTCAAGACTTGGCAGATTTGGTCTTGGAAGAAGAGGAACTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
93.13 |
100 |
0.931 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
93.13 |
100 |
0.931 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
93.13 |
100 |
0.931 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
93.13 |
100 |
0.931 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
92.366 |
100 |
0.924 |
| ssbB/cilA | Streptococcus mitis SK321 |
91.603 |
100 |
0.916 |
| ssbA | Streptococcus mutans UA159 |
75.573 |
100 |
0.756 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.714 |
85.496 |
0.519 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
86.26 |
0.412 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |