Detailed information NTG0988919

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AAFF19_RS07830
• Genome accession: NZ_CP152407
• Coordinates: 1685797..1686930 (-)
• Length: 377 a.a.
• NCBI ID: WP_342721626.1
• Uniprot ID: -
• Organism: Acidovorax sp. FHTAMBA
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1680797..1691930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFF19_RS07805 (AAFF19_07805)	-	1681385..1681813 (+)	429	WP_008906367.1	Hsp20/alpha crystallin family protein	-
AAFF19_RS07810 (AAFF19_07810)	-	1681851..1682504 (-)	654	WP_342721624.1	ABC transporter ATP-binding protein	-
AAFF19_RS07815 (AAFF19_07815)	miaA	1682501..1683511 (-)	1011	WP_342721838.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	-
AAFF19_RS07820 (AAFF19_07820)	-	1683504..1684745 (-)	1242	WP_182119492.1	multidrug effflux MFS transporter	-
AAFF19_RS07825 (AAFF19_07825)	-	1684905..1685738 (-)	834	WP_342721625.1	alpha/beta fold hydrolase	-
AAFF19_RS07830 (AAFF19_07830)	pilU	1685797..1686930 (-)	1134	WP_342721626.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AAFF19_RS07835 (AAFF19_07835)	gdhA	1687052..1688395 (-)	1344	WP_008906373.1	NADP-specific glutamate dehydrogenase	-
AAFF19_RS07840 (AAFF19_07840)	-	1688662..1689831 (+)	1170	WP_342721627.1	glycerophosphodiester phosphodiesterase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41378.75 Da
• Isoelectric Point: 6.0078

>NTDB_id=988919 AAFF19_RS07830 WP_342721626.1 1685797..1686930(-) (pilU) [Acidovorax sp. FHTAMBA]
MEIFSFLNVMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALLPGQVKQLAYSVMNEKQISEFEARMEMNLSISAENLGR
FRVNVFVQRGETGMVVRYIKNKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENLTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHHQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVMLNSPYIADLIAKGEFSVIKEAMGNSTEIGMCTFDQAL
YQLYTEGRISLEEALHNADSRTDLALRVRLAAGVSTADAGDLAIDTSNPVASASRLY

Nucleotide

• Length: 1134 bp

>NTDB_id=988919 AAFF19_RS07830 WP_342721626.1 1685797..1686930(-) (pilU) [Acidovorax sp. FHTAMBA]
GTGGAAATTTTCAGTTTTCTGAATGTCATGGTCGAAAAGGGCGGCTCGGACCTTTTCTTCAGTGTGGGCGCGCCGGTCAA
CCTCAAGATCGAGGGCGTCACCCACCCCTTGAAGATGCCGGCGCTGCTTCCCGGGCAGGTCAAGCAGCTGGCCTACTCGG
TGATGAACGAAAAGCAGATCAGCGAGTTCGAGGCGCGCATGGAGATGAATCTGTCCATCTCGGCCGAGAACCTGGGGCGG
TTTCGGGTGAATGTGTTTGTGCAGCGCGGTGAAACCGGCATGGTGGTGCGGTACATCAAGAACAAGATCCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAGCTGGTGCTGCGCAAACGGGGCCTGGTGCTGGTCACCGGCGCCACGGGCT
CGGGCAAATCGACCACGCTGGCGTCGATGATCAACTACCGCAACGAGAACCTCACGGGCCACATTCTTACCATCGAAGAC
CCCCTGGAGTTCCTGCACGCCCACAAGCGCTCGGTGGTGGACCAGCGAGAGGTGGGAATCGACACGCTGTCCTATGAAGA
AGCGCTCAAGAACGCACTGCGCGAAGCCCCCGATGTGATCATGATCGGCGAGATCCGCGACCGCAACACGATGAAGCAGG
CCATCGCCTATGCAGAAACCGGGCATCTGTGCCTGTCCACACTGCACGCCAACAACGCCAACCAGGCCATGGAGCGCGTC
ATCAACTTCTTCCCTGAAGACGCGCACCACCAGCTGCTCATCGACCTCAGCCTGAACCTGGCGGGGGTCGTGTCGCAGCG
GCTGATTCCGGGCCTGCACGAGAAACTGGTGCCCGCCGTGGAAGTGATGCTCAACTCTCCCTACATCGCGGATCTCATCG
CCAAGGGTGAGTTCTCGGTGATCAAGGAGGCGATGGGCAACAGCACCGAGATTGGCATGTGCACGTTTGACCAGGCGCTC
TACCAGCTGTACACGGAAGGCCGCATTTCTCTGGAAGAGGCGCTTCACAATGCGGACTCACGCACCGACCTGGCGTTGCG
CGTGCGCCTGGCAGCGGGGGTTTCCACGGCCGATGCGGGGGACCTGGCCATCGACACGTCCAACCCCGTTGCTTCGGCTT
CGCGCCTGTATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (46-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.958	93.634	0.515
pilU	Vibrio cholerae strain A1552	51.13	93.899	0.48
pilU	Acinetobacter baylyi ADP1	50.708	93.634	0.475
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.431	98.408	0.398
pilT	Acinetobacter nosocomialis M2	41.617	88.594	0.369
pilT	Acinetobacter baylyi ADP1	41.617	88.594	0.369
pilT	Acinetobacter baumannii D1279779	41.617	88.594	0.369
pilT	Acinetobacter baumannii strain A118	41.617	88.594	0.369
pilT	Pseudomonas aeruginosa PAK	41.124	89.655	0.369
pilT	Pseudomonas stutzeri DSM 10701	40.533	89.655	0.363